Rmu_sc0008241.1_g000018

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008241.1
OG0000591
Physical Location & Seq
Forward (+)
84571 .. 85764
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008241.1_g000018.1.cds

Sequence Viewer

Length: 954 bp
atgggattccggcatctgttcgcattcaacctagcaatgttagctaaacaaggttggcgtttgatacagcaaccagaatccttgatttgttggcttttgaaggcaatatactttcctcgctctagcttttgggatgcggagattggttcctctccttcttatgcttggagaagtattatacatgggagggatgtgcttagggcaggcataagccgtcatattggcaatgggctctccactaatatctggacttatccttggttgttaggtgaggagctgcagcaatttcagtctccttatgcgcattggatttcagacctcatctcctccccaggtacatggaattatgccctgttaactgattctgaactttggactcaactctggaaagctcctgtaccagggaaggtcaaagtatgtgtgtggaaggctgcttcaaatatcctacctactcggagcaggttgagtgaacgtggtattgatattgatacccaatgcccattctgtgaggaggaaattgaatctactattcatgcactacgtgattgcatccatgccaagtctttcttgcagttggctaatctccccaactctgactctactacaagtgttgctagttggtttcagactttctattctcagtctcctactacctttgcttccttgttgatggtgatttgggctacgtggagaaatcagaatgataaagtatggagtgatagtcccaaaccggctgctcctgtgcaaacacggaatgtacattgggcaaaaccttcggtggggatggtgaagttaaatgtggatgctactttttgcaatgtgaatgggaatgcagggattgggggtatctacagagatcatgaaggtagttgcctcggtgggtttcgacactcagttgcagtcacaagttcaactaggcacgctgaactcttagctttgatcctggggttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

317

Amino Acids

35.59

Weight (kDa)

8.46

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 450
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 934
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 3 cut(s) 337, 399, 759
AfiI CCNNNNNNNGG 2 cut(s) 401, 779
AgsI TTSAA 5 cut(s) 28, 100, 438, 521, 912
AjnI CCWGG 3 cut(s) 331, 400, 942
AluBI AGCT 5 cut(s) 44, 126, 277, 392, 935
AluI AGCT 5 cut(s) 44, 126, 277, 392, 935
Alw26I GTCTC 2 cut(s) 297, 648
AlwI GGATC 1 cut(s) 934
ApeKI GCWGC 4 cut(s) 277, 280, 431, 734
AspLEI GCGC 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 281, 685, 799
BanII GRGCYC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BbvI GCAGC 4 cut(s) 264, 292, 418, 721
BccI CCATC 2 cut(s) 664, 778
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 756, 790
BciT130I CCWGG 3 cut(s) 333, 402, 944
BcoDI GTCTC 2 cut(s) 297, 648
BfaI CTAG 4 cut(s) 32, 123, 615, 915
BfmI CTRYAG 2 cut(s) 278, 850
BfuAI ACCTGC 1 cut(s) 450
BisI GCNGC 4 cut(s) 278, 281, 432, 735
BlsI GCNGC 4 cut(s) 279, 282, 433, 736
Bme1390I CCNGG 3 cut(s) 333, 402, 944
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 3 cut(s) 333, 402, 944
BmsI GCATC 4 cut(s) 22, 124, 558, 793
Bpu10I CCTNAGC 1 cut(s) 197
BsaAI YACGTR 2 cut(s) 542, 687
BsaJI CCNNGG 5 cut(s) 257, 331, 401, 874, 943
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 779
Bse118I RCCGGY 1 cut(s) 730
Bse3DI GCAATG 3 cut(s) 42, 232, 823
BseBI CCWGG 3 cut(s) 333, 402, 944
BseDI CCNNGG 5 cut(s) 257, 331, 401, 874, 943
BseGI GGATG 5 cut(s) 139, 196, 549, 789, 808
BseLI CCNNNNNNNGG 2 cut(s) 401, 779
BseMI GCAATG 3 cut(s) 42, 232, 823
BseMII CTCAG 2 cut(s) 653, 906
BseRI GAGGAG 3 cut(s) 287, 316, 524
BseXI GCAGC 4 cut(s) 264, 292, 418, 721
BsiSI CCGG 2 cut(s) 10, 731
BslFI GGGAC 1 cut(s) 708
BslI CCNNNNNNNGG 2 cut(s) 401, 779
BsmAI GTCTC 2 cut(s) 297, 648
BsmFI GGGAC 1 cut(s) 708
BsmI GAATGC 2 cut(s) 23, 835
Bsp1286I GDGCHC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 2 cut(s) 856, 939
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 652, 905
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 1 cut(s) 934
BsrDI GCAATG 3 cut(s) 42, 232, 823
BsrFI RCCGGY 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 757
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 5 cut(s) 257, 331, 401, 874, 943
BssMI GATC 2 cut(s) 856, 939
BssT1I CCWWGG 1 cut(s) 257
Bst2UI CCWGG 3 cut(s) 333, 402, 944
BstAUI TGTACA 1 cut(s) 757
BstBAI YACGTR 2 cut(s) 542, 687
BstC8I GCNNGC 2 cut(s) 205, 921
BstDEI CTNAG 4 cut(s) 197, 639, 892, 931
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 5 cut(s) 139, 196, 549, 789, 808
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 2 cut(s) 859, 942
BstMAI GTCTC 2 cut(s) 297, 648
BstMBI GATC 2 cut(s) 856, 939
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 3 cut(s) 333, 402, 944
BstSCI CCNGG 3 cut(s) 331, 400, 942
BstSFI CTRYAG 2 cut(s) 278, 850
BstV1I GCAGC 4 cut(s) 264, 292, 418, 721
BstXI CCANNNNNNTGG 1 cut(s) 339
BtsCI GGATG 5 cut(s) 139, 196, 549, 789, 808
BveI ACCTGC 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 205, 921
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 730
Csp6I GTAC 3 cut(s) 336, 398, 758
CviAII CATG 5 cut(s) 182, 339, 533, 554, 860
CviQI GTAC 3 cut(s) 336, 398, 758
DdeI CTNAG 4 cut(s) 197, 639, 892, 931
DpnI GATC 2 cut(s) 858, 941
DpnII GATC 2 cut(s) 856, 939
DraIII CACNNNGTG 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 234
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRII CCWGG 3 cut(s) 331, 400, 942
EcoT14I CCWWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 5 cut(s) 185, 342, 536, 557, 863
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 1 cut(s) 708
FatI CATG 5 cut(s) 181, 338, 532, 553, 859
Fnu4HI GCNGC 4 cut(s) 278, 281, 432, 735
FokI GGATG 5 cut(s) 146, 203, 536, 796, 815
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 278, 281, 432, 735
FspAI RTGCGCAY 1 cut(s) 303
FspBI CTAG 4 cut(s) 32, 123, 615, 915
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 1 cut(s) 303
GluI GCNGC 4 cut(s) 278, 281, 432, 735
HapII CCGG 2 cut(s) 10, 731
HhaI GCGC 1 cut(s) 304
Hin1II CATG 5 cut(s) 185, 342, 536, 557, 863
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HinfI GANTC 6 cut(s) 6, 77, 362, 376, 521, 596
HpaI GTTAAC 1 cut(s) 357
HpaII CCGG 2 cut(s) 10, 731
HphI GGTGA 3 cut(s) 281, 685, 799
Hpy166II GTNNAC 2 cut(s) 357, 470
Hpy188I TCNGA 6 cut(s) 316, 367, 456, 595, 627, 699
Hpy188III TCNNGA 3 cut(s) 247, 385, 860
Hpy8I GTNNAC 2 cut(s) 357, 470
HpyAV CCTTC 6 cut(s) 94, 165, 400, 421, 783, 857
HpyCH4IV ACGT 3 cut(s) 472, 541, 686
HpyCH4V TGCA 8 cut(s) 280, 536, 549, 571, 745, 816, 833, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 4 cut(s) 197, 639, 892, 931
HpySE526I ACGT 3 cut(s) 472, 541, 686
Hsp92II CATG 5 cut(s) 185, 342, 536, 557, 863
HspAI GCGC 1 cut(s) 302
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 856, 939
LmnI GCTCC 4 cut(s) 274, 397, 456, 742
Lsp1109I GCAGC 4 cut(s) 264, 292, 418, 721
LweI GCATC 4 cut(s) 22, 124, 558, 793
MaeI CTAG 4 cut(s) 32, 123, 615, 915
MaeII ACGT 3 cut(s) 472, 541, 686
MaeIII GTNAC 1 cut(s) 901
MalI GATC 2 cut(s) 858, 941
MboI GATC 2 cut(s) 856, 939
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 284, 343, 516
MlyI GAGTC 2 cut(s) 370, 590
MnlI CCTC 9 cut(s) 126, 160, 180, 265, 329, 337, 502, 505, 884
MseI TTAA 2 cut(s) 356, 794
MspI CCGG 2 cut(s) 10, 731
MspR9I CCNGG 3 cut(s) 333, 402, 944
Mva1269I GAATGC 2 cut(s) 23, 835
MvaI CCWGG 3 cut(s) 333, 402, 944
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 856, 939
NlaIII CATG 5 cut(s) 185, 342, 536, 557, 863
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 901
NsbI TGCGCA 1 cut(s) 303
PagI TCATGA 1 cut(s) 859
PctI GAATGC 2 cut(s) 23, 835
PfeI GAWTC 4 cut(s) 6, 77, 362, 521
PkrI GCNGC 4 cut(s) 279, 282, 433, 736
PleI GAGTC 2 cut(s) 370, 590
PpsI GAGTC 2 cut(s) 370, 590
Ppu21I YACGTR 2 cut(s) 542, 687
Psp6I CCWGG 3 cut(s) 331, 400, 942
PspGI CCWGG 3 cut(s) 331, 400, 942
PspN4I GGNNCC 1 cut(s) 148
PstI CTGCAG 1 cut(s) 282
RsaI GTAC 3 cut(s) 337, 399, 759
RsaNI GTAC 3 cut(s) 336, 398, 758
SaqAI TTAA 2 cut(s) 356, 794
SatI GCNGC 4 cut(s) 278, 281, 432, 735
Sau3AI GATC 2 cut(s) 856, 939
SchI GAGTC 2 cut(s) 370, 590
ScrFI CCNGG 3 cut(s) 333, 402, 944
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 4 cut(s) 22, 124, 558, 793
SfcI CTRYAG 2 cut(s) 278, 850
Sse9I AATT 3 cut(s) 284, 343, 516
SsiI CCGC 1 cut(s) 137
SspMI CTAG 4 cut(s) 32, 123, 615, 915
StyD4I CCNGG 3 cut(s) 331, 400, 942
StyI CCWWGG 1 cut(s) 257
TaiI ACGT 3 cut(s) 475, 544, 689
TaqI TCGA 1 cut(s) 886
TasI AATT 3 cut(s) 284, 343, 516
TatI WGTACW 1 cut(s) 757
TfiI GAWTC 4 cut(s) 6, 77, 362, 521
Tru1I TTAA 2 cut(s) 356, 794
Tru9I TTAA 2 cut(s) 356, 794
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 4 cut(s) 277, 280, 431, 734
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 2 cut(s) 521, 876
TspGWI ACGGA 1 cut(s) 766
XagI CCTNNNNNAGG 1 cut(s) 399
XspI CTAG 4 cut(s) 32, 123, 615, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.