Rmu_sc0006633.1_g000007

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006633.1
OG0000591
Physical Location & Seq
Forward (+)
24724 .. 25566
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006633.1_g000007.1.cds

Sequence Viewer

Length: 843 bp
atgtggaatcagactttactttctgaattgtttcctccagatattgtgcagaagattttagctttgcctcttagtgtccgggttcatgatgatcgctggatttggactggtgataagcggggtgccttcactgttaaatcagcgtaccatttggcaaggagtagagtcttggacgagggtccaggatctcccagtcctagtgccatgatttggaaacaactttggaaggctcccgttcctggtaaagttaagatatgtgtttggagagcggcttcaaatactcttcccacacgtagtaggctcagtgaacgtggtattgatatcgatacccaatgtcctttctgtgatgaagaagttgaatcccctcttcatgctcttcgtgattgcagtcatgcagcttcgtttcttcaattggctcaaattcaatcttcagctccggcctccagtattattgaatggttagcctccttttcccaatcttccactacttttgctacattgttgatgattatatgggctatatggagaaatcgaaatgcaaaagtgtgggatggtgaggtcaaaatggcctcagaagctgtcccaattactttaggttggtgggaggaatataagaccactcatactagagttcgagtgccaagaccggtgagaaacgagttgtggaggaaacctccggttggtttggtcaagcttaatgttgatgctggctttgatagtgctacggggtatactggagttgggggggggtctttcgcgacctcaatggttcctgtcttggtggattcaggcactccgtcaggttctcaaattcagcgagacatggcgagcttcttgcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

280

Amino Acids

31.11

Weight (kDa)

8.93

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 731
AccII CGCG 1 cut(s) 758
AciI CCGC 2 cut(s) 118, 269
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 2 cut(s) 420, 810
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 210, 239, 680
AflIII ACRYGT 1 cut(s) 290
AgeI ACCGGT 1 cut(s) 646
AgsI TTSAA 5 cut(s) 276, 359, 410, 425, 455
AjnI CCWGG 2 cut(s) 181, 238
AluBI AGCT 6 cut(s) 62, 398, 434, 578, 694, 831
AluI AGCT 6 cut(s) 62, 398, 434, 578, 694, 831
Alw26I GTCTC 1 cut(s) 813
AlwI GGATC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 2 cut(s) 438, 567
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 420, 810
AsiGI ACCGGT 1 cut(s) 646
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 122, 566, 661
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 407
BccI CCATC 1 cut(s) 545
BcgI CGANNNNNNTGC 1 cut(s) 817
BciT130I CCWGG 2 cut(s) 183, 240
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 813
BfaI CTAG 2 cut(s) 198, 627
BisI GCNGC 2 cut(s) 270, 396
BlsI GCNGC 2 cut(s) 271, 397
Bme1390I CCNGG 3 cut(s) 80, 183, 240
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 4 cut(s) 124, 180, 231, 771
BmrFI CCNGG 3 cut(s) 80, 183, 240
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 658, 690
BpmI CTGGAG 3 cut(s) 21, 427, 756
BpuMI CCSGG 1 cut(s) 80
Bsa29I ATCGAT 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 293
BsaWI WCCGGW 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 239, 680
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 4 cut(s) 112, 192, 444, 739
BseBI CCWGG 2 cut(s) 183, 240
BseCI ATCGAT 1 cut(s) 324
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 3 cut(s) 210, 239, 680
BseMII CTCAG 2 cut(s) 316, 585
BseNI ACTGG 4 cut(s) 112, 192, 444, 739
BseXI GCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 758
BshFI GGCC 2 cut(s) 440, 569
BshNI GGYRCC 1 cut(s) 122
BshTI ACCGGT 1 cut(s) 646
BshVI ATCGAT 1 cut(s) 324
BsiSI CCGG 4 cut(s) 79, 437, 647, 677
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 3 cut(s) 210, 239, 680
BsmAI GTCTC 1 cut(s) 813
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 2 cut(s) 440, 569
Bsp143I GATC 2 cut(s) 91, 185
Bsp68I TCGCGA 1 cut(s) 758
BspACI CCGC 2 cut(s) 118, 269
BspANI GGCC 2 cut(s) 440, 569
BspCNI CTCAG 2 cut(s) 315, 584
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 758
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 4 cut(s) 124, 180, 231, 771
BspPI GGATC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 4 cut(s) 112, 192, 444, 739
BssAI RCCGGY 1 cut(s) 646
BssMI GATC 2 cut(s) 91, 185
BssNAI GTATAC 1 cut(s) 732
Bst1107I GTATAC 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 183, 240
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 3 cut(s) 288, 372, 381
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 709, 829
BstDEI CTNAG 3 cut(s) 71, 302, 571
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 1 cut(s) 758
BstKTI GATC 2 cut(s) 94, 188
BstMAI GTCTC 1 cut(s) 813
BstMBI GATC 2 cut(s) 91, 185
BstMWI GCNNNNNNNGC 1 cut(s) 575
BstNI CCWGG 2 cut(s) 183, 240
BstPAI GACNNNNGTC 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 78, 181, 238
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BstZ17I GTATAC 1 cut(s) 732
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 440, 569
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 129, 310
BtuMI TCGCGA 1 cut(s) 758
Cac8I GCNNGC 2 cut(s) 709, 829
CaiI CAGNNNCTG 1 cut(s) 578
CciI TCATGA 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 179
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 646
CspCI CAANNNNNGTGG 2 cut(s) 472, 507
CviAII CATG 5 cut(s) 86, 205, 371, 392, 823
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 3 cut(s) 71, 302, 571
DpnI GATC 2 cut(s) 93, 187
DpnII GATC 2 cut(s) 91, 185
Eam1104I CTCTTC 3 cut(s) 288, 372, 381
EarI CTCTTC 3 cut(s) 288, 372, 381
Eco32I GATATC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 181, 238
EcoRV GATATC 1 cut(s) 322
FaeI CATG 5 cut(s) 89, 208, 374, 395, 826
FaqI GGGAC 1 cut(s) 566
FatI CATG 5 cut(s) 85, 204, 370, 391, 822
FauI CCCGC 1 cut(s) 111
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 2 cut(s) 270, 396
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 2 cut(s) 270, 396
FspBI CTAG 2 cut(s) 198, 627
GluI GCNGC 2 cut(s) 270, 396
GsuI CTGGAG 3 cut(s) 21, 427, 756
HaeIII GGCC 2 cut(s) 440, 569
HapII CCGG 4 cut(s) 79, 437, 647, 677
Hin1II CATG 5 cut(s) 89, 208, 374, 395, 826
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 4 cut(s) 7, 165, 359, 785
HpaII CCGG 4 cut(s) 79, 437, 647, 677
HphI GGTGA 3 cut(s) 122, 566, 661
Hpy166II GTNNAC 2 cut(s) 308, 732
Hpy188I TCNGA 3 cut(s) 12, 25, 574
Hpy188III TCNNGA 4 cut(s) 38, 86, 380, 757
Hpy8I GTNNAC 2 cut(s) 308, 732
HpyAV CCTTC 2 cut(s) 136, 220
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 2 cut(s) 292, 310
HpyCH4V TGCA 5 cut(s) 49, 387, 395, 539, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 575
HpyF3I CTNAG 3 cut(s) 71, 302, 571
HpySE526I ACGT 2 cut(s) 292, 310
Hsp92II CATG 5 cut(s) 89, 208, 374, 395, 826
Kzo9I GATC 2 cut(s) 91, 185
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 2 cut(s) 235, 439
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 1 cut(s) 694
MaeI CTAG 2 cut(s) 198, 627
MaeII ACGT 2 cut(s) 292, 310
MalI GATC 2 cut(s) 93, 187
MbiI CCGCTC 1 cut(s) 269
MboI GATC 2 cut(s) 91, 185
MboII GAAGA 8 cut(s) 64, 275, 359, 362, 368, 398, 420, 471
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 185
MluCI AATT 5 cut(s) 26, 410, 420, 585, 810
MlyI GAGTC 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 135, 249, 696
MspI CCGG 4 cut(s) 79, 437, 647, 677
MspR9I CCNGG 3 cut(s) 80, 183, 240
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 2 cut(s) 183, 240
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 1 cut(s) 575
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 91, 185
NlaIII CATG 5 cut(s) 89, 208, 374, 395, 826
NlaIV GGNNCC 4 cut(s) 124, 180, 231, 771
NruI TCGCGA 1 cut(s) 758
PagI TCATGA 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 7, 359, 785
PflMI CCANNNNNTGG 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 181
PinAI ACCGGT 1 cut(s) 646
PkrI GCNGC 2 cut(s) 271, 397
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 293
PshAI GACNNNNGTC 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 181, 238
PspGI CCWGG 2 cut(s) 181, 238
PspN4I GGNNCC 4 cut(s) 124, 180, 231, 771
PspPI GGNCC 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 185
RruI TCGCGA 1 cut(s) 758
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 3 cut(s) 135, 249, 696
SatI GCNGC 2 cut(s) 270, 396
Sau3AI GATC 2 cut(s) 91, 185
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 3 cut(s) 80, 183, 240
SfaNI GCATC 1 cut(s) 694
SinI GGWCC 1 cut(s) 179
Sse9I AATT 5 cut(s) 26, 410, 420, 585, 810
SsiI CCGC 2 cut(s) 118, 269
SspMI CTAG 2 cut(s) 198, 627
StyD4I CCNGG 3 cut(s) 78, 181, 238
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 2 cut(s) 295, 313
TaqI TCGA 3 cut(s) 324, 532, 634
TasI AATT 5 cut(s) 26, 410, 420, 585, 810
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 3 cut(s) 7, 359, 785
Tru1I TTAA 3 cut(s) 135, 249, 696
Tru9I TTAA 3 cut(s) 135, 249, 696
TscAI CASTG 2 cut(s) 136, 310
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 74, 359, 363
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 2 cut(s) 136, 310
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 2 cut(s) 420, 810
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 2 cut(s) 198, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.