Rmu_sc0041085.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041085.1
OG0000591
Physical Location & Seq
Forward (+)
1721 .. 2145
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041085.1_g000002.1.cds

Sequence Viewer

Length: 315 bp
atggctttgggttggctagaagagtataaagcagctcacattacttccaagtcaggttcggctgctagggcgactccaaagtggaagaaacctccagctggctttgtaaaattgaatgttgacgcagcctttgatcaaatttcgtgtcgggcgggaatgcaattggctattgataatcatcttacacctttgctagtggagactgattgcttggatttggtgtctgcactatcctcctcttctttggatttttcggaactgcgttttctgttggcagacttgcgggttttgttgcatgaagcacaagacgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

104

Amino Acids

11.31

Weight (kDa)

5.47

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 152, 283
AcsI RAATTY 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 2 cut(s) 35, 98
AluI AGCT 2 cut(s) 35, 98
Alw26I GTCTC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 32, 62, 125
ApoI RAATTY 1 cut(s) 138
ArsI GACNNNNNNTTYG 4 cut(s) 113, 130, 145, 162
BbvI GCAGC 3 cut(s) 44, 49, 137
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 3 cut(s) 17, 66, 194
BisI GCNGC 3 cut(s) 33, 63, 126
BlsI GCNGC 3 cut(s) 34, 64, 127
BpmI CTGGAG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 3 cut(s) 44, 49, 137
BsgI GTGCAG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 2 cut(s) 152, 283
BssMI GATC 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 15, 244
BstC8I GCNNGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 68, 308
BstV1I GCAGC 3 cut(s) 44, 49, 137
Cac8I GCNNGC 1 cut(s) 100
CseI GACGC 1 cut(s) 131
CviAII CATG 1 cut(s) 296
CviJI RGCY 8 cut(s) 5, 16, 35, 62, 98, 102, 128, 167
CviKI_1 RGCY 8 cut(s) 5, 16, 35, 62, 98, 102, 128, 167
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 2 cut(s) 15, 244
EarI CTCTTC 2 cut(s) 15, 244
FaeI CATG 1 cut(s) 299
FaiI YATR 2 cut(s) 27, 297
FatI CATG 1 cut(s) 295
FauI CCCGC 2 cut(s) 145, 276
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 3 cut(s) 33, 63, 126
Fsp4HI GCNGC 3 cut(s) 33, 63, 126
FspBI CTAG 3 cut(s) 17, 66, 194
GluI GCNGC 3 cut(s) 33, 63, 126
GsuI CTGGAG 1 cut(s) 78
HgaI GACGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 299
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 160, 227, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 308
Hsp92II CATG 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 39, 84, 108
Lsp1109I GCAGC 3 cut(s) 44, 49, 137
MaeI CTAG 3 cut(s) 17, 66, 194
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 3 cut(s) 32, 97, 231
MfeI CAATTG 1 cut(s) 161
MluCI AATT 3 cut(s) 110, 138, 161
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 3 cut(s) 102, 244, 247
MspA1I CMGCKG 1 cut(s) 98
MunI CAATTG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 68, 308
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 299
PctI GAATGC 1 cut(s) 162
PkrI GCNGC 3 cut(s) 34, 64, 127
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 98
SatI GCNGC 3 cut(s) 33, 63, 126
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 67
SetI ASST 5 cut(s) 37, 58, 94, 100, 190
Sse9I AATT 3 cut(s) 110, 138, 161
SsiI CCGC 2 cut(s) 152, 283
SspMI CTAG 3 cut(s) 17, 66, 194
TasI AATT 3 cut(s) 110, 138, 161
TseI GCWGC 3 cut(s) 32, 62, 125
TspDTI ATGAA 1 cut(s) 312
XapI RAATTY 1 cut(s) 138
XspI CTAG 3 cut(s) 17, 66, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.