FvH4_5g28071

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000591
Physical Location & Seq
Reverse (-)
19295307 .. 19296426
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28071.t1

Sequence Viewer

Length: 744 bp
ATGGCAGACATACTAGTATATGGGATGAACCTTGGTTGTCAGAATGTATTTTGGCTCTTCCGGTCAATATTCATAATTATGATGATAGATGGATTTGGGGTGAAGACCGGAGAGAAAGCCCAAGTGCCCGAGAAAGTAAGGATTTGTGCTTGGAAAGCTGCCTCCAATATTCTTCCTACACGGAATAAGCTTAGTCAACGTGGTATTGATATTGACACACAATGTCCGTTCTGTGATGAAGAAGTGGAATCTCCTTTACATGCTTTGAGAGATTGTGTTCATGCTAGTTCTTTCTTCCAACTAGCCAACCTTCCAAGTCATATATTAGCTTCTACAGTTGGTATGCTGAATACCGTGTGGCACCATGTCAGTAATAATATGCCTATTCAGGTGCCCAGAGTTGATTGGCAGAAACCTCTTAGTGGAATGGTTAAACTTAATGTTGATGCTGCTTTTGATAACCCGTATAGTTTAAGGGGAGTTGGAGGTGTTTTTCGGGATGCTAATGGAACATTTCTTAGGGGTATTCGACATTCTTTACCTCATGTAGCCTCTATACGACATGTAGAACTTCAGACACTGATTAAGGGGTTGGAATATGCCTTATCAGATCACCTGGTGTCGTTGATTATGGAAACTGATTGTCAAGAGTTGGTGTATGCAGTCACAGGTCATTCCCTGGACCATTATGATTTGGGTTTCTCGCCATTCTTTGTCATGTCAAGAGGGAAGGTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

248

Amino Acids

27.68

Weight (kDa)

6.58

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 39 - 96 3e-11 zinc-binding in reverse transcriptase
RVT_3 PF13456 147 - 226 3.2e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03566
fragaria_vesca FvH4_2g12622 FvH4_2g12642 FvH4_2g13902 FvH4_3g05011 FvH4_3g18961 FvH4_3g31940 FvH4_4g08421 FvH4_4g21351 FvH4_5g28071 FvH4_5g34871 FvH4_6g21812 FvH4_6g30441 FvH4_6g33631
rosa_chinensis RchiOBHm_Chr1g0320221 RchiOBHm_Chr1g0356521 RchiOBHm_Chr4g0389021 RchiOBHm_Chr5g0020651 RchiOBHm_Chr5g0027511
rosa_laevigata RLG00000002966 RLG00000019504
rosa_multiflora Rmu_co7963640.1_g000001 Rmu_co7988458.1_g000001 Rmu_co8109512.1_g000001 Rmu_co8136160.1_g000001 Rmu_co8253655.1_g000001 Rmu_sc0000388.1_g000040 Rmu_sc0000540.1_g000056 Rmu_sc0000574.1_g000013 Rmu_sc0000623.1_g000001 Rmu_sc0000795.1_g000005 Rmu_sc0000795.1_g000006 Rmu_sc0001063.1_g000001 Rmu_sc0002116.1_g000001 Rmu_sc0002192.1_g000012 Rmu_sc0002640.1_g000015 Rmu_sc0003337.1_g000039 Rmu_sc0004298.1_g000003 Rmu_sc0004771.1_g000001 Rmu_sc0006119.1_g000010 Rmu_sc0006633.1_g000007 Rmu_sc0007025.1_g000016 Rmu_sc0007221.1_g000002 Rmu_sc0007222.1_g000002 Rmu_sc0007806.1_g000016 Rmu_sc0008241.1_g000018 Rmu_sc0008348.1_g000001 Rmu_sc0009034.1_g000001 Rmu_sc0009955.1_g000004 Rmu_sc0018325.1_g000009 Rmu_sc0028328.1_g000002 Rmu_sc0030178.1_g000001 Rmu_sc0034381.1_g000001 Rmu_sc0041085.1_g000001 Rmu_sc0041085.1_g000002
rosa_roxburghii Rroxscaffold_3G00233230 Rroxscaffold_7G00193120 Rroxscaffold_7G00194820
rosa_rugosa Rorug01G0017000 Rorug01G0036400 Rorug01G0062600 Rorug01G0118500 Rorug02G0351500 Rorug02G0497600 Rorug03G0233200 Rorug03G0279500 Rorug03G0347600 Rorug04G0077100 Rorug04G0077200 Rorug04G0210900 Rorug05G0206900 Rorug07G0202900 Rorug07G0334000
rosa_samantha Rh2CG195700 Rh4DG035800
rosa_wichuraiana Rw0G005080 Rw0G013600 Rw2G020080 Rw2G024380 Rw5G002230 Rw5G036790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 360, 391
AcuI CTGAAG 1 cut(s) 557
AdeI CACNNNGTG 1 cut(s) 619
AfiI CCNNNNNNNGG 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 562
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 2 cut(s) 615, 678
AluBI AGCT 3 cut(s) 158, 190, 329
AluI AGCT 3 cut(s) 158, 190, 329
AlwNI CAGNNNCTG 1 cut(s) 580
Ama87I CYCGRG 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 158, 449
AspS9I GGNCC 1 cut(s) 682
AsuHPI GGTGA 2 cut(s) 112, 605
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 682
BaeGI GKGCMC 2 cut(s) 129, 396
BanI GGYRCC 2 cut(s) 360, 391
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 145, 436
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 617, 680
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 285, 302
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 2 cut(s) 159, 450
BlsI GCNGC 2 cut(s) 160, 451
Bme1390I CCNGG 2 cut(s) 617, 680
Bme18I GGWCC 1 cut(s) 682
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 682
BmiI GGNNCC 2 cut(s) 362, 393
BmrFI CCNGG 2 cut(s) 617, 680
BmsI GCATC 2 cut(s) 436, 490
BpiI GAAGAC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 31, 678
BsaWI WCCGGW 2 cut(s) 60, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 422
BseBI CCWGG 2 cut(s) 617, 680
BseDI CCNNGG 2 cut(s) 31, 678
BseGI GGATG 2 cut(s) 30, 505
BseLI CCNNNNNNNGG 1 cut(s) 422
BseSI GKGCMC 2 cut(s) 129, 396
BseXI GCAGC 2 cut(s) 145, 436
BshNI GGYRCC 2 cut(s) 360, 391
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 61, 108
BslI CCNNNNNNNGG 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 129, 396
Bsp143I GATC 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 362, 393
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 360, 391
BssECI CCNNGG 2 cut(s) 31, 678
BssMI GATC 1 cut(s) 610
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 617, 680
Bst4CI ACNGT 2 cut(s) 337, 355
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 191, 419, 518
BstF5I GGATG 2 cut(s) 30, 505
BstKTI GATC 1 cut(s) 613
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 617, 680
BstNSI RCATGY 2 cut(s) 263, 566
BstSCI CCNGG 2 cut(s) 615, 678
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 2 cut(s) 129, 396
BstV1I GCAGC 2 cut(s) 145, 436
BstV2I GAAGAC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 30, 505
BtsIMutI CAGTG 1 cut(s) 578
CaiI CAGNNNCTG 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 682
CsiI ACCWGGT 1 cut(s) 615
CviAII CATG 7 cut(s) 260, 281, 365, 545, 563, 718, 738
CviJI RGCY 7 cut(s) 55, 119, 158, 190, 305, 329, 551
CviKI_1 RGCY 7 cut(s) 55, 119, 158, 190, 305, 329, 551
DdeI CTNAG 3 cut(s) 191, 419, 518
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
DraIII CACNNNGTG 1 cut(s) 619
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 615, 678
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 7 cut(s) 263, 284, 368, 548, 566, 721, 741
FatI CATG 7 cut(s) 259, 280, 364, 544, 562, 717, 737
Fnu4HI GCNGC 2 cut(s) 159, 450
FokI GGATG 2 cut(s) 37, 512
Fsp4HI GCNGC 2 cut(s) 159, 450
FspBI CTAG 3 cut(s) 14, 285, 302
GluI GCNGC 2 cut(s) 159, 450
HapII CCGG 2 cut(s) 61, 108
Hin1II CATG 7 cut(s) 263, 284, 368, 548, 566, 721, 741
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 61, 108
HphI GGTGA 2 cut(s) 112, 605
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 42, 576, 610
Hpy188III TCNNGA 3 cut(s) 497, 647, 723
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 320, 724
HpyCH4III ACNGT 2 cut(s) 337, 355
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 191, 419, 518
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 7 cut(s) 263, 284, 368, 548, 566, 721, 741
Kzo9I GATC 1 cut(s) 610
LguI GCTCTTC 1 cut(s) 62
LpnPI CCDG 9 cut(s) 74, 121, 374, 409, 602, 629, 654, 665, 692
Lsp1109I GCAGC 2 cut(s) 145, 436
LweI GCATC 2 cut(s) 436, 490
MabI ACCWGGT 1 cut(s) 615
MaeI CTAG 3 cut(s) 14, 285, 302
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 664, 733
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 5 cut(s) 49, 115, 164, 251, 286
MhlI GDGCHC 2 cut(s) 129, 396
MluCI AATT 1 cut(s) 75
MmeI TCCRAC 3 cut(s) 322, 463, 573
MnlI CCTC 6 cut(s) 172, 426, 479, 552, 562, 719
MseI TTAA 4 cut(s) 432, 438, 473, 585
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 61, 108
MspR9I CCNGG 2 cut(s) 617, 680
MvaI CCWGG 2 cut(s) 617, 680
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 610
NlaIII CATG 7 cut(s) 263, 284, 368, 548, 566, 721, 741
NlaIV GGNNCC 2 cut(s) 362, 393
NmuCI GTSAC 1 cut(s) 664
NspI RCATGY 2 cut(s) 263, 566
PciI ACATGT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 160, 451
PscI ACATGT 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 615, 678
PspGI CCWGG 2 cut(s) 615, 678
PspN4I GGNNCC 2 cut(s) 362, 393
PspPI GGNCC 1 cut(s) 682
PstNI CAGNNNCTG 1 cut(s) 580
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 432, 438, 473, 585
SatI GCNGC 2 cut(s) 159, 450
Sau3AI GATC 1 cut(s) 610
Sau96I GGNCC 1 cut(s) 682
ScrFI CCNGG 2 cut(s) 617, 680
SduI GDGCHC 2 cut(s) 129, 396
SexAI ACCWGGT 1 cut(s) 615
SfaNI GCATC 2 cut(s) 436, 490
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 77
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 1 cut(s) 75
SspI AATATT 2 cut(s) 69, 169
SspMI CTAG 3 cut(s) 14, 285, 302
StyD4I CCNGG 2 cut(s) 615, 678
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 337, 355
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 529
TasI AATT 1 cut(s) 75
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 4 cut(s) 432, 438, 473, 585
Tru9I TTAA 4 cut(s) 432, 438, 473, 585
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 2 cut(s) 158, 449
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 4 cut(s) 41, 61, 252, 269
TspGWI ACGGA 2 cut(s) 196, 216
TspRI CASTG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 682
XceI RCATGY 2 cut(s) 263, 566
XspI CTAG 3 cut(s) 14, 285, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.