Rorug03G0347600

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000577
Physical Location & Seq
Reverse (-)
42312253 .. 42314707
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0347600.1

Sequence Viewer

Length: 288 bp
ATGGTTTCTTGCAATGGAGGATTGAATCAAATGCGAGCAGCGATTTGTGATATGGTTGCAATTGCCAGATATTTGAATGTGACTCTTATCGTTCCAGAGCTGGATAAGAACTCATTTTGGGCTGCGAGTGAGTTTCAAGACATTTTCGATGTTAATCATTTCATTAGATCATTGAGAGATGAGGTTCGGATACTAAAGAAACTGCCTCCAAAGCTCAACAAGAGAGCAGTATATTTTGTTGTACTTGAGCTGGATATTGGTGTCAGCTTGTGTAACAGAGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

95

Amino Acids

10.81

Weight (kDa)

8.55

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 1 - 76 9.3e-29 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 243
AgsI TTSAA 3 cut(s) 25, 76, 137
AluBI AGCT 4 cut(s) 100, 214, 250, 267
AluI AGCT 4 cut(s) 100, 214, 250, 267
ApeKI GCWGC 2 cut(s) 38, 122
BbvI GCAGC 2 cut(s) 50, 109
BciVI GTATCC 1 cut(s) 183
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 39, 123
BlsI GCNGC 2 cut(s) 40, 124
BpuEI CTTGAG 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 153
BseMI GCAATG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 50, 109
Bsp143I GATC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 19
BssMI GATC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 170
BstMBI GATC 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 50, 109
BsuI GTATCC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 242
CviJI RGCY 5 cut(s) 100, 122, 214, 250, 267
CviKI_1 RGCY 5 cut(s) 100, 122, 214, 250, 267
CviQI GTAC 1 cut(s) 242
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
FaiI YATR 2 cut(s) 53, 232
Fnu4HI GCNGC 2 cut(s) 39, 123
Fsp4HI GCNGC 2 cut(s) 39, 123
GluI GCNGC 2 cut(s) 39, 123
HinfI GANTC 2 cut(s) 25, 82
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 95, 137
HpyCH4V TGCA 2 cut(s) 12, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 167
LpnPI CCDG 4 cut(s) 79, 86, 108, 236
Lsp1109I GCAGC 2 cut(s) 50, 109
MaeIII GTNAC 2 cut(s) 79, 272
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MfeI CAATTG 1 cut(s) 60
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 4 cut(s) 11, 175, 216, 272
MseI TTAA 1 cut(s) 153
MunI CAATTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 1 cut(s) 167
NmuCI GTSAC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 40, 124
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 39, 123
Sau3AI GATC 1 cut(s) 167
SchI GAGTC 1 cut(s) 76
SetI ASST 6 cut(s) 102, 186, 216, 252, 269, 283
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 60
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 60
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 38, 122
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.