Prupe.1G049500_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Reverse (-)
3481689 .. 3482093
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G049500.1

Sequence Viewer

Length: 405 bp
ATGGCTCGGTTCAATTATGGAAGTGTAGCTCTGCTCACCATGTTCATTTTCTTCTTCACGTGGGCAGGGCTTGGTCGGAAGACAAGACATGTTAGAGTCACAAATGCATTGGAGGGAGGTTCGACCCTCACCGTTAACTGCCGATCCGAGGATGATGACATTGGTATCCAAGTGCTCCAACCTCAAGACTCATTTGAATTCCATTTTAAACCGACATTTATCGGAATAACACGATTCTACTGCGGTTTTCAGTTGCCGGATGCATCGATTCACTGGTTCGACGTGTATAATCACTGGAGAGATGGTAGAGATTGCAGTGAGTGTTATTGGGTTATACGTGATGGTGGCCCTTGCATGTTTAACTGGGACAACCAACAATATGACATTTGCTATAAGTGGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

135

Amino Acids

15.8

Weight (kDa)

5.71

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 243
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 197
AcvI CACGTG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 2 cut(s) 88, 282
AgsI TTSAA 2 cut(s) 13, 197
AjiI CACGTC 1 cut(s) 283
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 28, 121
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BbrPI CACGTG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 2 cut(s) 296, 335
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciVI GTATCC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 347
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 250, 272
BmuI ACTGGG 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 266
BsaAI YACGTR 2 cut(s) 60, 338
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 3 cut(s) 278, 299, 368
BseCI ATCGAT 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 157, 265
BseLI CCNNNNNNNGG 1 cut(s) 148
BseNI ACTGG 3 cut(s) 278, 299, 368
BshFI GGCC 1 cut(s) 348
BshVI ATCGAT 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 143
BspACI CCGC 1 cut(s) 243
BspANI GGCC 1 cut(s) 348
BspDI ATCGAT 1 cut(s) 266
BspPI GGATC 1 cut(s) 138
BsrI ACTGG 3 cut(s) 278, 299, 368
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 133
BstBAI YACGTR 2 cut(s) 60, 338
BstF5I GGATG 2 cut(s) 157, 265
BstKTI GATC 1 cut(s) 146
BstMBI GATC 1 cut(s) 143
BstNSI RCATGY 2 cut(s) 92, 358
BstV2I GAAGAC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 266
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 348
BsuTUI ATCGAT 1 cut(s) 266
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 157, 265
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 3 cut(s) 271, 292, 322
Cfr13I GGNCC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 266
CviAII CATG 3 cut(s) 40, 89, 355
CviJI RGCY 4 cut(s) 5, 29, 70, 348
CviKI_1 RGCY 4 cut(s) 5, 29, 70, 348
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DraI TTTAAA 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 197
EcoT22I ATGCAT 2 cut(s) 109, 265
FaeI CATG 3 cut(s) 43, 92, 358
FaiI YATR 8 cut(s) 18, 41, 90, 288, 335, 356, 381, 393
FaqI GGGAC 1 cut(s) 380
FatI CATG 3 cut(s) 39, 88, 354
FokI GGATG 2 cut(s) 164, 272
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 348
HapII CCGG 1 cut(s) 257
Hin1II CATG 3 cut(s) 43, 92, 358
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 96, 188, 234, 268
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 1 cut(s) 257
HphI GGTGA 2 cut(s) 28, 121
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 3 cut(s) 78, 148, 224
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 3 cut(s) 59, 282, 337
HpyCH4V TGCA 4 cut(s) 107, 263, 315, 354
HpySE526I ACGT 3 cut(s) 59, 282, 337
Hsp92II CATG 3 cut(s) 43, 92, 358
KspAI GTTAAC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 5 cut(s) 51, 259, 270, 280, 349
LweI GCATC 2 cut(s) 250, 272
MaeII ACGT 3 cut(s) 59, 282, 337
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 145
MboI GATC 1 cut(s) 143
MboII GAAGA 3 cut(s) 43, 46, 91
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 13, 197
MlyI GAGTC 2 cut(s) 105, 182
MmeI TCCRAC 2 cut(s) 56, 202
MnlI CCTC 5 cut(s) 106, 110, 137, 142, 192
Mph1103I ATGCAT 2 cut(s) 109, 265
MseI TTAA 3 cut(s) 135, 207, 360
MspI CCGG 1 cut(s) 257
NdeII GATC 1 cut(s) 143
NlaIII CATG 3 cut(s) 43, 92, 358
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 2 cut(s) 109, 265
NspI RCATGY 2 cut(s) 92, 358
PciI ACATGT 1 cut(s) 88
PfeI GAWTC 2 cut(s) 234, 268
PleI GAGTC 2 cut(s) 104, 182
PmaCI CACGTG 1 cut(s) 60
PmlI CACGTG 1 cut(s) 60
PpsI GAGTC 2 cut(s) 104, 182
Ppu21I YACGTR 2 cut(s) 60, 338
PscI ACATGT 1 cut(s) 88
PspCI CACGTG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 347
SaqAI TTAA 3 cut(s) 135, 207, 360
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 2 cut(s) 105, 182
SduI GDGCHC 1 cut(s) 177
SetI ASST 6 cut(s) 31, 62, 121, 184, 285, 340
SfaNI GCATC 2 cut(s) 250, 272
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 13, 197
SsiI CCGC 1 cut(s) 243
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 3 cut(s) 62, 285, 340
TaqI TCGA 3 cut(s) 122, 266, 279
TasI AATT 2 cut(s) 13, 197
TfiI GAWTC 2 cut(s) 234, 268
Tru1I TTAA 3 cut(s) 135, 207, 360
Tru9I TTAA 3 cut(s) 135, 207, 360
TscAI CASTG 3 cut(s) 278, 299, 322
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 34
TspRI CASTG 3 cut(s) 278, 299, 322
XapI RAATTY 1 cut(s) 197
XceI RCATGY 2 cut(s) 92, 358
Zsp2I ATGCAT 2 cut(s) 109, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.