Prupe.1G026600_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Forward (+)
1848628 .. 1849053
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G026600.1

Sequence Viewer

Length: 426 bp
ATGGCTTGGTTCATTCGAAATGCAATGCTGCTGCTAATTCTGTTTTCGTTGTATCGAATAAACATATGTGACACTGACGAAGGAACGCTGCTCATAAAACGAAGATTTGTTAGAGTCACAAATGATTTGGGTGGAAACTTGACCCTTACAGTTCACTGTAAATCAGCGGATGACGACATTGGTGTCCAAGTGCTTCCTCCTCATGCTTCCTTTGGATTCAATTTTCGACCTAGCTGGATATTCAGTACACAATTCTACTGCAGTTTTCAGTGGCCAAACACATTTAAATGGTTCGATATATACGATAACCGGAGAGACGCACCGCATTGCAGCAAATGTTGGTGGCGTATAGTACCAAATGGTCCATGTAGGTTTAACTGGTATGACAAAACGTATGAGGTTTGCTGTCAGTGGAATAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.85

Weight (kDa)

8.45

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
AciI CCGC 2 cut(s) 167, 323
AcoI YGGCCR 1 cut(s) 272
AfaI GTAC 2 cut(s) 247, 354
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 309
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 28, 31, 88, 330
AspS9I GGNCC 1 cut(s) 362
AsuII TTCGAA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 274
BbvI GCAGC 4 cut(s) 15, 18, 75, 342
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 259
BisI GCNGC 4 cut(s) 29, 32, 89, 331
BlsI GCNGC 4 cut(s) 30, 33, 90, 332
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
Bpu14I TTCGAA 1 cut(s) 16
BsaWI WCCGGW 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 2 cut(s) 30, 325
BseGI GGATG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 30, 325
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 4 cut(s) 15, 18, 75, 342
BshFI GGCC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsnI GGCC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 16
BspACI CCGC 2 cut(s) 167, 323
BspANI GGCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 30, 325
BsrI ACTGG 1 cut(s) 383
Bst4CI ACNGT 2 cut(s) 151, 158
BstBI TTCGAA 1 cut(s) 16
BstF5I GGATG 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 259
BstV1I GCAGC 4 cut(s) 15, 18, 75, 342
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 4 cut(s) 72, 154, 275, 416
Cfr13I GGNCC 1 cut(s) 362
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 246, 353
CviAII CATG 2 cut(s) 203, 366
CviJI RGCY 3 cut(s) 5, 234, 274
CviKI_1 RGCY 3 cut(s) 5, 234, 274
CviQI GTAC 2 cut(s) 246, 353
DraI TTTAAA 1 cut(s) 286
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 362
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 2 cut(s) 206, 369
FatI CATG 2 cut(s) 202, 365
FauNDI CATATG 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 29, 32, 89, 331
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 29, 32, 89, 331
FspBI CTAG 1 cut(s) 231
GluI GCNGC 4 cut(s) 29, 32, 89, 331
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 206, 369
HinfI GANTC 2 cut(s) 114, 216
HpaII CCGG 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 154, 248
Hpy8I GTNNAC 2 cut(s) 154, 248
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 151, 158
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 23, 261, 330
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 2 cut(s) 206, 369
LpnPI CCDG 3 cut(s) 220, 323, 364
Lsp1109I GCAGC 4 cut(s) 15, 18, 75, 342
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 2 cut(s) 68, 115
MboII GAAGA 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 274
MluCI AATT 3 cut(s) 36, 220, 251
MluNI TGGCCA 1 cut(s) 274
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 3 cut(s) 207, 210, 391
Mox20I TGGCCA 1 cut(s) 274
MscI TGGCCA 1 cut(s) 274
MseI TTAA 2 cut(s) 285, 375
MslI CAYNNNNRTG 1 cut(s) 286
Msp20I TGGCCA 1 cut(s) 274
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 310
NdeI CATATG 1 cut(s) 65
NlaIII CATG 2 cut(s) 206, 369
NmuCI GTSAC 2 cut(s) 68, 115
NspV TTCGAA 1 cut(s) 16
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 4 cut(s) 30, 33, 90, 332
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 362
PstI CTGCAG 1 cut(s) 263
RsaI GTAC 2 cut(s) 247, 354
RsaNI GTAC 2 cut(s) 246, 353
RseI CAYNNNNRTG 1 cut(s) 286
SaqAI TTAA 2 cut(s) 285, 375
SatI GCNGC 4 cut(s) 29, 32, 89, 331
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 123
SetI ASST 5 cut(s) 232, 236, 374, 395, 402
SfcI CTRYAG 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 16
SgeI CNNG 9 cut(s) 18, 151, 200, 215, 243, 247, 322, 378, 391
SinI GGWCC 1 cut(s) 362
SmiI ATTTAAAT 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 286
Sse9I AATT 3 cut(s) 36, 220, 251
SsiI CCGC 2 cut(s) 167, 323
SspMI CTAG 1 cut(s) 231
SwaI ATTTAAAT 1 cut(s) 286
TaaI ACNGT 2 cut(s) 151, 158
TaiI ACGT 1 cut(s) 395
TaqI TCGA 4 cut(s) 16, 55, 226, 294
TasI AATT 3 cut(s) 36, 220, 251
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 2 cut(s) 285, 375
Tru9I TTAA 2 cut(s) 285, 375
TscAI CASTG 4 cut(s) 79, 161, 275, 416
TseFI GTSAC 2 cut(s) 68, 115
TseI GCWGC 4 cut(s) 28, 31, 88, 330
Tsp45I GTSAC 2 cut(s) 68, 115
TspRI CASTG 4 cut(s) 79, 161, 275, 416
VpaK11BI GGWCC 1 cut(s) 362
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.