Prupe.1G058100_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Reverse (-)
4133238 .. 4133675
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G058100.1

Sequence Viewer

Length: 438 bp
ATGGCTTTGTTCACTAGGAATGTAGGATTGCTAGTGCTGCTTGTGTTTGTTTGGTCCTTAACCATGTGTGATGCAGGAATTCTTCCAAACGTAGGAGCTCTTCCAAATGTGACACATGTGAACATTACTAATGATTTGGGCGGAGACTTGACGCTCACTATTCACTGTAAATCCGCAGACGATGATCTTGGTGCCCATGTCCTCCCCCCTCTCATCTCCTATGAATTTGTATTTCGACCCAACATGTGGTGGACTACACAATACTTTTGCTTGGTGGAGTGGCCGGGTGCATCTCATTATATTGATATATACATACAAAAAAGAGATCAAGATAGGTGTGACATTTGTATGTGGGTTATAGTACCCTATGGCGGATGCTTGTTCAACTACAAGACCAGGCAATATGACATTTGCTATCCATGGAACCCACCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

146

Amino Acids

16.62

Weight (kDa)

5.05

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 246
AciI CCGC 3 cut(s) 141, 174, 372
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 2 cut(s) 78, 224
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 3 cut(s) 92, 246, 371
AflIII ACRYGT 2 cut(s) 115, 243
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 138
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 78, 224
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 100
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 397
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 3 cut(s) 15, 32, 432
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 285, 397
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 2 cut(s) 193, 425
BmrFI CCNGG 2 cut(s) 285, 397
BmsI GCATC 3 cut(s) 61, 299, 365
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 419
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 246, 371
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 419
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 3 cut(s) 92, 246, 371
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 92, 246, 371
BsmAI GTCTC 1 cut(s) 138
BsnI GGCC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 100, 196
Bsp143I GATC 2 cut(s) 184, 325
Bsp19I CCATGG 1 cut(s) 419
BspACI CCGC 3 cut(s) 141, 174, 372
BspANI GGCC 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 193, 425
BspQI GCTCTTC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 2 cut(s) 184, 325
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 2 cut(s) 187, 328
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 184, 325
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 397
BstNSI RCATGY 2 cut(s) 119, 247
BstSCI CCNGG 2 cut(s) 283, 395
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 54
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 362
CviAII CATG 5 cut(s) 64, 116, 197, 244, 420
CviJI RGCY 3 cut(s) 5, 98, 283
CviKI_1 RGCY 3 cut(s) 5, 98, 283
CviQI GTAC 1 cut(s) 362
DpnI GATC 2 cut(s) 186, 327
DpnII GATC 2 cut(s) 184, 325
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 2 cut(s) 156, 387
Ecl136II GAGCTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 419
EcoT38I GRGCYC 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 5 cut(s) 67, 119, 200, 247, 423
FatI CATG 5 cut(s) 63, 115, 196, 243, 419
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 387
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 3 cut(s) 15, 32, 432
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 283
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 160
Hin1II CATG 5 cut(s) 67, 119, 200, 247, 423
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 3 cut(s) 12, 121, 252
Hpy188III TCNNGA 1 cut(s) 329
Hpy8I GTNNAC 3 cut(s) 12, 121, 252
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 74, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 5 cut(s) 67, 119, 200, 247, 423
Kzo9I GATC 2 cut(s) 184, 325
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 4 cut(s) 60, 297, 382, 409
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 3 cut(s) 61, 299, 365
MaeI CTAG 3 cut(s) 15, 32, 432
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 109, 338
MalI GATC 2 cut(s) 186, 327
MboI GATC 2 cut(s) 184, 325
MboII GAAGA 2 cut(s) 74, 92
MhlI GDGCHC 2 cut(s) 100, 196
MluCI AATT 2 cut(s) 78, 224
MnlI CCTC 2 cut(s) 212, 219
MseI TTAA 2 cut(s) 59, 436
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 285, 397
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 1 cut(s) 419
NdeII GATC 2 cut(s) 184, 325
NlaIII CATG 5 cut(s) 67, 119, 200, 247, 423
NlaIV GGNNCC 2 cut(s) 193, 425
NmuCI GTSAC 2 cut(s) 109, 338
NspI RCATGY 2 cut(s) 119, 247
PciI ACATGT 2 cut(s) 115, 243
PciSI GCTCTTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 246
PkrI GCNGC 1 cut(s) 39
PscI ACATGT 2 cut(s) 115, 243
Psp124BI GAGCTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 193, 425
PspPI GGNCC 1 cut(s) 54
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 59, 436
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 184, 325
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 285, 397
SduI GDGCHC 2 cut(s) 100, 196
SetI ASST 4 cut(s) 93, 100, 338, 433
SfaNI GCATC 3 cut(s) 61, 299, 365
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 2 cut(s) 78, 224
SsiI CCGC 3 cut(s) 141, 174, 372
SspMI CTAG 3 cut(s) 15, 32, 432
SstI GAGCTC 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 283, 395
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 235
TasI AATT 2 cut(s) 78, 224
Tru1I TTAA 2 cut(s) 59, 436
Tru9I TTAA 2 cut(s) 59, 436
TscAI CASTG 1 cut(s) 170
TseFI GTSAC 2 cut(s) 109, 338
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 2 cut(s) 109, 338
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 54
XapI RAATTY 2 cut(s) 78, 224
XceI RCATGY 2 cut(s) 119, 247
XspI CTAG 3 cut(s) 15, 32, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.