RLG00000009984

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000577
Physical Location & Seq
Reverse (-)
61522151 .. 61522549
399 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009984

Sequence Viewer

Length: 399 bp
ATGGCTTCGTTCGTTGGAAGAACAGTGAAGCTAATATTGCTTTTGCTATTCTTAACAACCACATGTGATGCTAAAACATATGTTAGAATCACTAATGATTTGGGCGGAGGAATGAATCTCACCTTTCACTGTAAATCCGCAGATGATGATCTCGGCGTCAAAGTGCTTCTTCCCCAACAATATTATGAGTTCAGTTTCAAACCTACCTTGATAGGCCGAACAGACTTCTATTGCAGTTTTCAATGGATTGGTTCATTTAAATGGTTTGATGTATATGTTGATGGAAGAGACTACTGCCATGAGTGTTGGTGGAGTATAAAATCTTCTGGCAATGGCCCTTGTAGGCTTAACTTCAAAACTGGCCAGTATGAGGATTGTTTGCCGTGGAACAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

133

Amino Acids

15.27

Weight (kDa)

7.53

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 129 5e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 105, 138
AcoI YGGCCR 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 199, 242, 355
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 282
AoxI GGCC 3 cut(s) 214, 334, 361
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 112
BalI TGGCCA 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 307, 339
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 335
BmsI GCATC 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 383
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 364, 364
Bse3DI GCAATG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 383
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 1 cut(s) 337
BseNI ACTGG 2 cut(s) 364, 364
BshFI GGCC 3 cut(s) 216, 336, 363
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 3 cut(s) 216, 336, 363
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 105, 138
BspANI GGCC 3 cut(s) 216, 336, 363
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 2 cut(s) 364, 364
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 25, 131
Bst6I CTCTTC 1 cut(s) 280
BstACI GRCGYC 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 383
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 66
BsuRI GGCC 3 cut(s) 216, 336, 363
BtgI CCRYGG 1 cut(s) 383
BtsIMutI CAGTG 2 cut(s) 30, 127
Cfr13I GGNCC 1 cut(s) 335
CseI GACGC 1 cut(s) 145
CviAII CATG 2 cut(s) 63, 299
CviJI RGCY 6 cut(s) 5, 31, 216, 336, 346, 363
CviKI_1 RGCY 6 cut(s) 5, 31, 216, 336, 346, 363
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DraI TTTAAA 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 120
FaeI CATG 2 cut(s) 66, 302
FaiI YATR 9 cut(s) 64, 79, 81, 186, 274, 276, 300, 317, 369
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 2 cut(s) 62, 298
FauNDI CATATG 1 cut(s) 79
HaeIII GGCC 3 cut(s) 216, 336, 363
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 2 cut(s) 66, 302
HinfI GANTC 2 cut(s) 87, 115
HphI GGTGA 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 25, 131
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 2 cut(s) 66, 302
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 312, 345, 377
LweI GCATC 1 cut(s) 58
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 4 cut(s) 30, 161, 297, 315
MlsI TGGCCA 1 cut(s) 363
MluNI TGGCCA 1 cut(s) 363
MnlI CCTC 2 cut(s) 101, 364
Mox20I TGGCCA 1 cut(s) 363
MscI TGGCCA 1 cut(s) 363
MseI TTAA 3 cut(s) 53, 258, 348
MslI CAYNNNNRTG 1 cut(s) 259
Msp20I TGGCCA 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 79
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 66, 302
NmeAIII GCCGAG 1 cut(s) 132
NspI RCATGY 1 cut(s) 66
PciI ACATGT 1 cut(s) 62
PfeI GAWTC 2 cut(s) 87, 115
PscI ACATGT 1 cut(s) 62
PspPI GGNCC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 259
SaqAI TTAA 3 cut(s) 53, 258, 348
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 335
SetI ASST 4 cut(s) 33, 125, 205, 209
SfaNI GCATC 1 cut(s) 58
SgeI CNNG 8 cut(s) 75, 164, 220, 311, 339, 351, 372, 376
SmiI ATTTAAAT 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 259
SsiI CCGC 2 cut(s) 105, 138
SspI AATATT 2 cut(s) 36, 182
SwaI ATTTAAAT 1 cut(s) 259
TaaI ACNGT 2 cut(s) 25, 131
TfiI GAWTC 2 cut(s) 87, 115
Tru1I TTAA 3 cut(s) 53, 258, 348
Tru9I TTAA 3 cut(s) 53, 258, 348
TscAI CASTG 2 cut(s) 30, 134
TspDTI ATGAA 2 cut(s) 128, 243
TspRI CASTG 2 cut(s) 30, 134
XceI RCATGY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.