FvH4_4g02050

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000577
Physical Location & Seq
Forward (+)
1811911 .. 1812488
578 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02050.t1

Sequence Viewer

Length: 417 bp
ATGTGTTCCTCTATTGGAAGAGCAATGATGCTGAAGTTGCTTGTGTTGCTCTTGACAACTGCTTGTTGTGAAGCAAGCTGGACAAAACATGTAAGAGTTACAAATCAAATACCAGGCGTTACCCTCAATGTTCATTGCAAATCCGCTGATGATGATCTCGGCCTCCAAGAGCTTGCCCCTAATGCTTTCTTTGAGTTCAGTTTTCGATCTAGTTTTATAGGGGACACTGATTTCTACTGTAGTTTCCTGTGGCCTGGTGCACCACTAGAGTCGTTTGATATATATATCGGCAATAGAGATCTCAAAGTTTGCGACAAGTGTTGGTGGTCTGTAAGACCTACTCAGGATGGTCCTCATCCATCCATGTTGAATTGGGGAAGCGGCCAATATGAAATTTGTAAACCATGGAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

139

Amino Acids

15.62

Weight (kDa)

5.85

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 136 1.3e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 381
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 112, 253
AluBI AGCT 2 cut(s) 78, 172
AluI AGCT 2 cut(s) 78, 172
Alw21I GWGCWC 1 cut(s) 262
Alw44I GTGCAC 1 cut(s) 258
AoxI GGCC 3 cut(s) 160, 251, 382
ApaLI GTGCAC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 262
BccI CCATC 2 cut(s) 341, 367
BciT130I CCWGG 2 cut(s) 114, 255
BfaI CTAG 2 cut(s) 210, 266
BfmI CTRYAG 1 cut(s) 238
BglII AGATCT 1 cut(s) 298
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 114, 255
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmrFI CCNGG 2 cut(s) 114, 255
BmsI GCATC 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 404
Bse3DI GCAATG 2 cut(s) 30, 133
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 2 cut(s) 114, 255
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 3 cut(s) 352, 355, 359
BseJI GATNNNNATC 1 cut(s) 153
BseMI GCAATG 2 cut(s) 30, 133
BseMII CTCAG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 262
BshFI GGCC 3 cut(s) 162, 253, 384
BsiHKAI GWGCWC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 3 cut(s) 162, 253, 384
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 154, 206, 298
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 2 cut(s) 144, 381
BspANI GGCC 3 cut(s) 162, 253, 384
BspCNI CTCAG 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 30, 133
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 3 cut(s) 154, 206, 298
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 114, 255
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 76, 174
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 352, 355, 359
BstKTI GATC 3 cut(s) 157, 209, 301
BstMBI GATC 3 cut(s) 154, 206, 298
BstMWI GCNNNNNNNGC 3 cut(s) 37, 46, 182
BstNI CCWGG 2 cut(s) 114, 255
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 112, 253
BstSFI CTRYAG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 3 cut(s) 162, 253, 384
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 3 cut(s) 352, 355, 359
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 76, 174
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 3 cut(s) 89, 364, 405
CviJI RGCY 5 cut(s) 78, 162, 172, 253, 384
CviKI_1 RGCY 5 cut(s) 78, 162, 172, 253, 384
DdeI CTNAG 1 cut(s) 342
DpnI GATC 3 cut(s) 156, 208, 300
DpnII GATC 3 cut(s) 154, 206, 298
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 112, 253
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 3 cut(s) 92, 367, 408
FaiI YATR 8 cut(s) 90, 218, 281, 283, 285, 365, 390, 406
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 88, 363, 404
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 3 cut(s) 342, 346, 359
Fsp4HI GCNGC 1 cut(s) 382
FspBI CTAG 2 cut(s) 210, 266
GluI GCNGC 1 cut(s) 382
HaeIII GGCC 3 cut(s) 162, 253, 384
Hin1II CATG 3 cut(s) 92, 367, 408
HinfI GANTC 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 260, 401
Hpy188III TCNNGA 2 cut(s) 52, 344
Hpy8I GTNNAC 2 cut(s) 260, 401
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 138, 260
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 46, 182
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 3 cut(s) 92, 367, 408
Kzo9I GATC 3 cut(s) 154, 206, 298
LguI GCTCTTC 1 cut(s) 13
LpnPI CCDG 7 cut(s) 64, 99, 126, 240, 260, 267, 329
LweI GCATC 1 cut(s) 18
MaeI CTAG 2 cut(s) 210, 266
MaeIII GTNAC 2 cut(s) 97, 118
MalI GATC 3 cut(s) 156, 208, 300
MboI GATC 3 cut(s) 154, 206, 298
MboII GAAGA 1 cut(s) 30
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 370, 393
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 19, 134, 173, 363
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 114, 255
MvaI CCWGG 2 cut(s) 114, 255
MwoI GCNNNNNNNGC 3 cut(s) 37, 46, 182
NcoI CCATGG 1 cut(s) 404
NdeII GATC 3 cut(s) 154, 206, 298
NlaIII CATG 3 cut(s) 92, 367, 408
NmeAIII GCCGAG 1 cut(s) 138
NspI RCATGY 1 cut(s) 92
PciI ACATGT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 383
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PscI ACATGT 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 112, 253
PspGI CCWGG 2 cut(s) 112, 253
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 13
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 3 cut(s) 154, 206, 298
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 114, 255
SduI GDGCHC 1 cut(s) 262
SetI ASST 3 cut(s) 80, 174, 340
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 350
Sse9I AATT 2 cut(s) 370, 393
SsiI CCGC 2 cut(s) 144, 381
SspMI CTAG 2 cut(s) 210, 266
StyD4I CCNGG 2 cut(s) 112, 253
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 205
TasI AATT 2 cut(s) 370, 393
TauI GCSGC 1 cut(s) 384
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 122, 405
TspRI CASTG 1 cut(s) 232
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 393
XceI RCATGY 1 cut(s) 92
XspI CTAG 2 cut(s) 210, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.