RchiOBHm_Chr4g0389421

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000577
Physical Location & Seq
Forward (+)
4393684 .. 4394282
599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36255

Sequence Viewer

Length: 486 bp
ATGTTTTGGTTACAAAAAAAATCTGTTGGCTATTCCTGCTTCAACTCAATGGTTCAGGGAATTTTGTATAGCTTGACCAAAGCAAACATGGCTTCGTTTGTTGGAAGAACAGTGAAGCTAATATTGCTTTTGCTATTCTTAACAACCACATGTGATGCTAAAACATATGTTAGAATCACTAATGATTTTAGCGGAGGAATGAATCTCACCTTTCACTGTAAATCCGCAGATGATGATCTCGGCGTCAAAGTGCTTCTTCCCCAACAATACTATGAGTTCAGTTTCAAACCTACCTTGATAGGCCGAACAGACTTCTATTGCAGTTTTCAATGGATTGGTTCATTTAAATGGTTTGATGTATATGTTGATGGAAGAGACTACTGCCATGAGTGTTGGTGGAGTATAAAATCTTCTGGCAATGGCCCTTGTAGGCTTAACTTCAAAACCGGCCAGTATGATGATTGTTTGCCGTGGAACAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

161

Amino Acids

18.65

Weight (kDa)

8.59

Isoelectric Point (pI)

25.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 57 - 158 7.9e-24 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 225
AcoI YGGCCR 1 cut(s) 448
AcsI RAATTY 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 4 cut(s) 43, 286, 329, 442
AluBI AGCT 2 cut(s) 72, 118
AluI AGCT 2 cut(s) 72, 118
Alw26I GTCTC 1 cut(s) 369
AoxI GGCC 3 cut(s) 301, 421, 448
ApoI RAATTY 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 199
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
BccI CCATC 1 cut(s) 362
BceAI ACGGC 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 422
BmsI GCATC 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 470
Bse118I RCCGGY 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 470
BseJI GATNNNNATC 1 cut(s) 234
BseMI GCAATG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 451
BshFI GGCC 3 cut(s) 303, 423, 450
BsiSI CCGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 369
BsnI GGCC 3 cut(s) 303, 423, 450
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 2 cut(s) 192, 225
BspANI GGCC 3 cut(s) 303, 423, 450
BsrDI GCAATG 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 446
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 1 cut(s) 235
BssNI GRCGYC 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 112, 218
Bst6I CTCTTC 1 cut(s) 367
BstACI GRCGYC 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 470
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 36, 89, 124
BstNSI RCATGY 1 cut(s) 153
BsuRI GGCC 3 cut(s) 303, 423, 450
BtgI CCRYGG 1 cut(s) 470
BtsIMutI CAGTG 2 cut(s) 117, 214
Cfr10I RCCGGY 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 1 cut(s) 232
CviAII CATG 3 cut(s) 88, 150, 386
CviJI RGCY 8 cut(s) 30, 72, 92, 118, 303, 423, 433, 450
CviKI_1 RGCY 8 cut(s) 30, 72, 92, 118, 303, 423, 433, 450
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
DraI TTTAAA 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
FaeI CATG 3 cut(s) 91, 153, 389
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 3 cut(s) 87, 149, 385
FauNDI CATATG 1 cut(s) 166
FspBI CTAG 1 cut(s) 484
HaeIII GGCC 3 cut(s) 303, 423, 450
HapII CCGG 1 cut(s) 447
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 91, 153, 389
HinfI GANTC 2 cut(s) 174, 202
HpaII CCGG 1 cut(s) 447
HphI GGTGA 1 cut(s) 199
HpyCH4III ACNGT 2 cut(s) 112, 218
HpyCH4V TGCA 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 89, 124
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 91, 153, 389
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 41, 49, 399, 460, 464
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 484
MaeIII GTNAC 1 cut(s) 9
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 4 cut(s) 117, 248, 384, 402
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 1 cut(s) 188
MseI TTAA 3 cut(s) 140, 345, 435
MslI CAYNNNNRTG 1 cut(s) 346
MspI CCGG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 36, 89, 124
NdeI CATATG 1 cut(s) 166
NdeII GATC 1 cut(s) 235
NlaIII CATG 3 cut(s) 91, 153, 389
NmeAIII GCCGAG 1 cut(s) 219
NspI RCATGY 1 cut(s) 153
PciI ACATGT 1 cut(s) 149
PfeI GAWTC 2 cut(s) 174, 202
PscI ACATGT 1 cut(s) 149
PspPI GGNCC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 346
SaqAI TTAA 3 cut(s) 140, 345, 435
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 422
SetI ASST 5 cut(s) 74, 120, 212, 292, 296
SfaNI GCATC 1 cut(s) 145
SmiI ATTTAAAT 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 346
Sse9I AATT 1 cut(s) 60
SsiI CCGC 2 cut(s) 192, 225
SspI AATATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 484
SwaI ATTTAAAT 1 cut(s) 346
TaaI ACNGT 2 cut(s) 112, 218
TasI AATT 1 cut(s) 60
TfiI GAWTC 2 cut(s) 174, 202
Tru1I TTAA 3 cut(s) 140, 345, 435
Tru9I TTAA 3 cut(s) 140, 345, 435
TscAI CASTG 2 cut(s) 117, 221
TspDTI ATGAA 2 cut(s) 215, 330
TspRI CASTG 2 cut(s) 117, 221
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.