RchiOBHm_Chr4g0389231

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000577
Physical Location & Seq
Forward (+)
4322842 .. 4323066
225 bp
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UTR
Exon/CDS
Intron
PRQ36239

Sequence Viewer

Length: 225 bp
ATGCTTGTACTCCGTGTCCAGCTTCTTCTCTTTTGCTTTCACTGTAAATCTGCAGATGATGATCTCGGCGTCAAAGTGCTTCTTCCCCAACAATACTGTGAGTTCAGTTTTAAACCTACCTTGATAGGCCGAACAGACTTCTATTGCAGTTTTCAATGGATTGCTTCATTTAAATGGTTTGATGTATATGTTGATGGAAGAGACTACTGCCATGAGTGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

74

Amino Acids

8.89

Weight (kDa)

5.44

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 13 - 71 1.2e-14 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 9
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw26I GTCTC 1 cut(s) 195
AoxI GGCC 1 cut(s) 127
BccI CCATC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 60
BseJI GATNNNNATC 1 cut(s) 60
BshFI GGCC 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 55
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 44, 98
Bst6I CTCTTC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 69
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 40
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 22, 129
CviKI_1 RGCY 2 cut(s) 22, 129
CviQI GTAC 1 cut(s) 8
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraI TTTAAA 2 cut(s) 112, 172
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
FaeI CATG 1 cut(s) 215
FaiI YATR 3 cut(s) 187, 189, 213
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FatI CATG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 129
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 44, 98
HpyCH4V TGCA 2 cut(s) 53, 147
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 215
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 1 cut(s) 32
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 3 cut(s) 17, 74, 210
MseI TTAA 2 cut(s) 111, 171
MslI CAYNNNNRTG 1 cut(s) 172
NdeII GATC 1 cut(s) 61
NlaIII CATG 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 45
PstI CTGCAG 1 cut(s) 55
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 172
SaqAI TTAA 2 cut(s) 111, 171
Sau3AI GATC 1 cut(s) 61
SetI ASST 3 cut(s) 24, 118, 122
SfcI CTRYAG 1 cut(s) 51
SgeI CNNG 5 cut(s) 17, 26, 31, 77, 133
SmiI ATTTAAAT 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 172
SwaI ATTTAAAT 1 cut(s) 172
TaaI ACNGT 2 cut(s) 44, 98
TatI WGTACW 1 cut(s) 7
Tru1I TTAA 2 cut(s) 111, 171
Tru9I TTAA 2 cut(s) 111, 171
TscAI CASTG 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.