Prupe.1G057000_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Forward (+)
4070405 .. 4070776
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G057000.1

Sequence Viewer

Length: 372 bp
ATGGCTTTGCTCATAAAAAATGTATTGTTGCCGCTAATGGTGTTGGTGTTGTTCCGAACTACTTGCGGTTTAAGTCTTCATCAGCCTACACAAACCGTTATAGCCACTAATGATTTGGGCGCAGAGATGAACATTCACTGTAAATCCAAGCAGGACGATCTTGGTTCCCATCTTATCCCCATTAAAGGCAAGTATGAGTTTTCACTTCGACCCAACTTTTGTGGGACAACACAATTTTATTGCAGTTTCCAATGGGGAACAGAATTTCACTATTCCGATATATGCATAGATTCTAGAGACTTCAAGTTTTGTGATACTAATAAGTGTTTGTGGAGCATAATACCAAAAGGTCCTTGCATGTGGAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

124

Amino Acids

14.12

Weight (kDa)

7.56

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 66
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 68
BccI CCATC 1 cut(s) 177
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 238
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 32, 66
BspLI GGNNCC 1 cut(s) 166
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 97, 140
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 136
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 1 cut(s) 358
CviJI RGCY 3 cut(s) 5, 85, 104
CviKI_1 RGCY 3 cut(s) 5, 85, 104
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 1 cut(s) 361
FaiI YATR 8 cut(s) 14, 101, 195, 281, 283, 287, 338, 359
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 290
Hpy188I TCNGA 2 cut(s) 56, 277
Hpy188III TCNNGA 1 cut(s) 294
HpyCH4III ACNGT 2 cut(s) 97, 140
HpyCH4V TGCA 3 cut(s) 243, 285, 357
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 1 cut(s) 137
MaeI CTAG 1 cut(s) 294
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 68
MluCI AATT 2 cut(s) 233, 263
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 3 cut(s) 71, 183, 370
NdeII GATC 1 cut(s) 157
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 287
NspI RCATGY 1 cut(s) 361
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 350
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 350
PspPPI RGGWCCY 1 cut(s) 350
SaqAI TTAA 3 cut(s) 71, 183, 370
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 350
SetI ASST 1 cut(s) 352
SgeI CNNG 8 cut(s) 75, 160, 164, 173, 202, 306, 316, 366
SinI GGWCC 1 cut(s) 350
Sse9I AATT 2 cut(s) 233, 263
SsiI CCGC 2 cut(s) 32, 66
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 97, 140
TaqI TCGA 1 cut(s) 208
TasI AATT 2 cut(s) 233, 263
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 3 cut(s) 71, 183, 370
Tru9I TTAA 3 cut(s) 71, 183, 370
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 68, 143
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.