RLG00000013253

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000577
Physical Location & Seq
Reverse (-)
28702197 .. 28703848
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013253

Sequence Viewer

Length: 384 bp
ATGGCTTTACCTACTAGATATGTTCTGTTTTTAACCGTGCTTCTTCTGTTAAAAACTACATGTGAAGCACAGATAGTCAAGCACAAAACTCATCTCCAGATCTCTAATTACATGGAGACTGAGCTCACTATTCATTGTAAATCCAAGGACGACGATATCGGTGTTAAGACACTGCCTCCTCAAGGCTCCTATGCGTTCAGCTTCCGACCAAACTTTTGGAACTCCACCCTATTCTTTTGCAAGTTCACCTGGAAGGATGGATCTCACTGGTGTAGAGATATCAAGGGTTTGGCTTTATTGGAGAGGTTATGGTTTGGGTCCTTCAACCTACCTGAGGCTCTCATTGTGTCTCGTTGGGTTGAATGTATCATTAGTGATCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

128

Amino Acids

14.79

Weight (kDa)

8.3

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 90 2.2e-17 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 182, 334
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 325, 362
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 2 cut(s) 124, 201
AluI AGCT 2 cut(s) 124, 201
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 110, 354
AlwI GGATC 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 318
AxyI CCTNAGG 1 cut(s) 333
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 110, 354
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 380
BglII AGATCT 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 187, 319
BmrFI CCNGG 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 334
Bse1I ACTGG 1 cut(s) 272
Bse21I CCTNAGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 2 cut(s) 182, 334
BseMII CTCAG 2 cut(s) 111, 324
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 182, 334
BsmAI GTCTC 2 cut(s) 110, 354
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 3 cut(s) 99, 260, 376
BspCNI CTCAG 2 cut(s) 112, 325
BspLI GGNNCC 2 cut(s) 187, 319
BspPI GGATC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 99, 260, 376
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 120, 333
BstENI CCTNNNNNAGG 2 cut(s) 180, 332
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 3 cut(s) 102, 263, 379
BstMAI GTCTC 2 cut(s) 110, 354
BstMBI GATC 3 cut(s) 99, 260, 376
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 99, 260
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 2 cut(s) 99, 260
Bsu36I CCTNAGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 170, 265
Cfr13I GGNCC 1 cut(s) 318
CviAII CATG 2 cut(s) 60, 112
CviJI RGCY 6 cut(s) 5, 124, 186, 201, 293, 338
CviKI_1 RGCY 6 cut(s) 5, 124, 186, 201, 293, 338
DdeI CTNAG 2 cut(s) 120, 333
DpnI GATC 3 cut(s) 101, 262, 378
DpnII GATC 3 cut(s) 99, 260, 376
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 157, 280
Eco47I GGWCC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 2 cut(s) 180, 332
EcoO109I RGGNCCY 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 2 cut(s) 157, 280
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 63, 115
FaiI YATR 6 cut(s) 21, 61, 113, 192, 310, 382
FatI CATG 2 cut(s) 59, 111
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 80
Hin1II CATG 2 cut(s) 63, 115
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 247, 331
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 120, 333
Hsp92II CATG 2 cut(s) 63, 115
Kzo9I GATC 3 cut(s) 99, 260, 376
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 110, 235, 253, 262, 345
MaeI CTAG 1 cut(s) 15
MalI GATC 3 cut(s) 101, 262, 378
MboI GATC 3 cut(s) 99, 260, 376
MboII GAAGA 1 cut(s) 35
MflI RGATCY 2 cut(s) 99, 260
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 4 cut(s) 186, 189, 297, 328
MseI TTAA 3 cut(s) 32, 50, 165
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
NdeII GATC 3 cut(s) 99, 260, 376
NlaIII CATG 2 cut(s) 63, 115
NlaIV GGNNCC 2 cut(s) 187, 319
NspI RCATGY 1 cut(s) 63
PciI ACATGT 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 318
PscI ACATGT 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 187, 319
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PsuI RGATCY 2 cut(s) 99, 260
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 32, 50, 165
Sau3AI GATC 3 cut(s) 99, 260, 376
Sau96I GGNCC 1 cut(s) 318
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 13, 126, 203, 251, 308, 330, 334
SfcI CTRYAG 1 cut(s) 380
SinI GGWCC 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 37
TasI AATT 1 cut(s) 106
Tru1I TTAA 3 cut(s) 32, 50, 165
Tru9I TTAA 3 cut(s) 32, 50, 165
TscAI CASTG 2 cut(s) 177, 272
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 2 cut(s) 177, 272
VpaK11BI GGWCC 1 cut(s) 318
XagI CCTNNNNNAGG 2 cut(s) 180, 332
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.