RchiOBHm_Chr4g0396771

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000577
Physical Location & Seq
Reverse (-)
12852917 .. 12853321
405 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36914

Sequence Viewer

Length: 405 bp
ATGTCATTGTACAACATTAGAATTGAATTCCTGCTGATGCTGCTTTTCTTTTCCCTAACTATGTGCTCAGCTAGTATATTCGGTAGAGTACATGTTAAAATCTCTAACGAGCTAGGTCAAGGATTGGTCCTGAACCTTCATTGCAAATCAAGAGATGATGATCTCGGATCACATGCCCTCCCCATTCATGGCTCGTTTCAGTTTAGTTTCCGACCAAGCGTTATTCGGACTACAATCTTTACATGCAGTTTTCAATGGAATGGTGGATATCACGTTGCAGAAATTTACAACCACGACAGAGACAGGTGTAGAAATTGTACCTGGAGTATAATACCATCAGGACCATGGTTGTACAACTTCGACACCAAGAAGTCTTATTGTTATTTGTGGCCTCAAAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

134

Amino Acids

15.58

Weight (kDa)

8.81

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 130 1.6e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 2 cut(s) 26, 282
AfaI GTAC 4 cut(s) 11, 90, 319, 353
AfiI CCNNNNNNNGG 2 cut(s) 188, 398
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 2 cut(s) 26, 254
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 2 cut(s) 71, 112
AluI AGCT 2 cut(s) 71, 112
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 1 cut(s) 175
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 26, 282
AspS9I GGNCC 2 cut(s) 127, 341
AvaII GGWCC 2 cut(s) 127, 341
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 2 cut(s) 72, 113
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 2 cut(s) 127, 341
BmgT120I GGNCC 2 cut(s) 127, 341
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 343
Bpu1102I GCTNAGC 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 344
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 398
Bse3DI GCAATG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 159
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 344
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 188, 398
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 188, 398
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 68
Bsp1407I TGTACA 2 cut(s) 9, 351
Bsp143I GATC 2 cut(s) 160, 167
Bsp1720I GCTNAGC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 344
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 80
BspPI GGATC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 139
BsrGI TGTACA 2 cut(s) 9, 351
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 2 cut(s) 160, 167
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 322
BstAUI TGTACA 2 cut(s) 9, 351
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 344
BstKTI GATC 2 cut(s) 163, 170
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 160, 167
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 3 cut(s) 95, 176, 246
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 127, 341
Csp6I GTAC 4 cut(s) 10, 89, 318, 352
CviAII CATG 5 cut(s) 92, 173, 188, 243, 345
CviJI RGCY 4 cut(s) 71, 112, 192, 391
CviKI_1 RGCY 4 cut(s) 71, 112, 192, 391
CviQI GTAC 4 cut(s) 10, 89, 318, 352
DdeI CTNAG 1 cut(s) 67
DpnI GATC 2 cut(s) 162, 169
DpnII GATC 2 cut(s) 160, 167
Eco130I CCWWGG 1 cut(s) 344
Eco32I GATATC 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 127, 341
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 5 cut(s) 95, 176, 191, 246, 348
FaiI YATR 8 cut(s) 62, 77, 93, 174, 189, 244, 329, 346
FatI CATG 5 cut(s) 91, 172, 187, 242, 344
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 2 cut(s) 72, 113
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 343
HaeIII GGCC 1 cut(s) 391
Hin1II CATG 5 cut(s) 95, 176, 191, 246, 348
Hpy188I TCNGA 3 cut(s) 167, 212, 228
Hpy188III TCNNGA 3 cut(s) 130, 150, 339
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 3 cut(s) 144, 246, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 67
HpySE526I ACGT 1 cut(s) 273
Hsp92II CATG 5 cut(s) 95, 176, 191, 246, 348
Kzo9I GATC 2 cut(s) 160, 167
LpnPI CCDG 6 cut(s) 44, 143, 289, 307, 324, 334
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 27
MaeI CTAG 2 cut(s) 72, 113
MaeII ACGT 1 cut(s) 273
MalI GATC 2 cut(s) 162, 169
MboI GATC 2 cut(s) 160, 167
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 4 cut(s) 21, 26, 282, 313
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 188, 402
MseI TTAA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 322
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 40
NcoI CCATGG 1 cut(s) 344
NdeII GATC 2 cut(s) 160, 167
NlaIII CATG 5 cut(s) 95, 176, 191, 246, 348
NspI RCATGY 3 cut(s) 95, 176, 246
PciI ACATGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 42
PscI ACATGT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 2 cut(s) 127, 341
RsaI GTAC 4 cut(s) 11, 90, 319, 353
RsaNI GTAC 4 cut(s) 10, 89, 318, 352
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 160, 167
Sau96I GGNCC 2 cut(s) 127, 341
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 73, 114, 118, 138, 276, 308, 323
SfaNI GCATC 1 cut(s) 27
SinI GGWCC 2 cut(s) 127, 341
Sse9I AATT 4 cut(s) 21, 26, 282, 313
SspMI CTAG 2 cut(s) 72, 113
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 344
TaiI ACGT 1 cut(s) 276
TaqI TCGA 1 cut(s) 360
TasI AATT 4 cut(s) 21, 26, 282, 313
TatI WGTACW 3 cut(s) 9, 88, 351
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 128, 176
VpaK11BI GGWCC 2 cut(s) 127, 341
XapI RAATTY 2 cut(s) 26, 282
XceI RCATGY 3 cut(s) 95, 176, 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XspI CTAG 2 cut(s) 72, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.