Rh3AG328900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000577
Physical Location & Seq
Forward (+)
46852664 .. 46880874
28211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG328900.1

Sequence Viewer

Length: 468 bp
ATGGAGACTGAGCTCACTATTCATTGTAAATCCAAGGACAACGATATCGGTGTTAAGACACTGCCTCCTCAAGGCTCCTATGCGTTCAGCTTCCGACCAAACTTTTGGAACTCCACTCTATTCTTTTGCAAGTTCACCTGGAAGGATGGATCTCACTGGTTTGATATTTACGTACAAACCAGAGACCAACATTCATGCGTAAAGAACTGTAACTGGTTCGTTGTAAAGAATGGAAGTGGTGTGTGCCGGTTAATTGAAGGGGAGGCTCATTTGGTAGATATGTGCTACCCGTGGAACGATGCGTCTCATGCAGAATCAATGCTCCAACCCCAATTCTTGCCCAAGTTTCGTGCTTTTGTAATCTTCCCCTATTTTTCTGAGTTTGGTTTCAATTGGTGTGCACGTGGTAGCACAATTTTACTCCAAATTGGGCCTAAGAAAAACCACAAGAAGGATGCTCTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

155

Amino Acids

18.0

Weight (kDa)

8.47

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 3 - 98 1.5e-24 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AcvI CACGTG 1 cut(s) 404
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 71, 451
AgsI TTSAA 2 cut(s) 257, 391
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 2 cut(s) 13, 90
AluI AGCT 2 cut(s) 13, 90
Alw21I GWGCWC 2 cut(s) 15, 403
Alw26I GTCTC 2 cut(s) 177, 309
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 1 cut(s) 157
AoxI GGCC 1 cut(s) 431
ApaLI GTGCAC 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 15, 403
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 139
BcoDI GTCTC 2 cut(s) 177, 309
Bme1390I CCNGG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 289, 445
BpuEI CTTGAG 1 cut(s) 54
BsaAI YACGTR 2 cut(s) 172, 404
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 33, 290
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 451
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 161, 218
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 33, 290
BseGI GGATG 2 cut(s) 151, 460
BseLI CCNNNNNNNGG 2 cut(s) 71, 451
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 161, 218
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 403
BshFI GGCC 1 cut(s) 433
BsiHKAI GWGCWC 2 cut(s) 15, 403
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 71, 451
BsmAI GTCTC 2 cut(s) 177, 309
BsmBI CGTCTC 1 cut(s) 309
BsnI GGCC 1 cut(s) 433
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 15, 403
Bsp143I GATC 1 cut(s) 149
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 2 cut(s) 161, 218
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 33, 290
BssMI GATC 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 209
BstBAI YACGTR 2 cut(s) 172, 404
BstDEI CTNAG 3 cut(s) 9, 378, 435
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 151, 460
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 2 cut(s) 177, 309
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 403
BstSNI TACGTA 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 105
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 151, 460
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 2 cut(s) 59, 154
CciI TCATGA 1 cut(s) 464
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 173
CviAII CATG 3 cut(s) 195, 308, 465
CviJI RGCY 5 cut(s) 13, 75, 90, 266, 433
CviKI_1 RGCY 5 cut(s) 13, 75, 90, 266, 433
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 3 cut(s) 9, 378, 435
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 13
Eco105I TACGTA 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 13
Eco72I CACGTG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 13
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 137
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 3 cut(s) 198, 311, 468
FaiI YATR 5 cut(s) 81, 196, 281, 309, 466
FatI CATG 3 cut(s) 194, 307, 464
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 15
HaeIII GGCC 1 cut(s) 433
HapII CCGG 1 cut(s) 247
HgaI GACGC 1 cut(s) 291
Hin1II CATG 3 cut(s) 198, 311, 468
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 135, 401
Hpy188I TCNGA 2 cut(s) 95, 379
Hpy188III TCNNGA 1 cut(s) 465
Hpy8I GTNNAC 2 cut(s) 135, 401
HpyAV CCTTC 3 cut(s) 136, 251, 445
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 171, 403
HpyCH4V TGCA 3 cut(s) 129, 311, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 9, 378, 435
HpySE526I ACGT 2 cut(s) 171, 403
Hsp92II CATG 3 cut(s) 198, 311, 468
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 80, 327
LpnPI CCDG 6 cut(s) 124, 142, 151, 193, 199, 260
LweI GCATC 2 cut(s) 289, 445
MaeII ACGT 2 cut(s) 171, 403
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 355
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 15, 403
MluCI AATT 5 cut(s) 252, 332, 391, 414, 426
MmeI TCCRAC 2 cut(s) 118, 349
MnlI CCTC 3 cut(s) 75, 78, 256
MseI TTAA 2 cut(s) 54, 251
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 139
MunI CAATTG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 1 cut(s) 149
NlaIII CATG 3 cut(s) 198, 311, 468
NlaIV GGNNCC 1 cut(s) 76
PagI TCATGA 1 cut(s) 464
PfeI GAWTC 1 cut(s) 314
PmaCI CACGTG 1 cut(s) 404
PmlI CACGTG 1 cut(s) 404
Ppu21I YACGTR 2 cut(s) 172, 404
Psp124BI GAGCTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 137
PspCI CACGTG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 431
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 2 cut(s) 54, 251
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 2 cut(s) 15, 403
SetI ASST 5 cut(s) 15, 92, 140, 174, 406
SfaNI GCATC 2 cut(s) 289, 445
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SnaBI TACGTA 1 cut(s) 172
Sse9I AATT 5 cut(s) 252, 332, 391, 414, 426
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 174, 406
TasI AATT 5 cut(s) 252, 332, 391, 414, 426
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 2 cut(s) 54, 251
Tru9I TTAA 2 cut(s) 54, 251
TscAI CASTG 2 cut(s) 66, 161
TspDTI ATGAA 2 cut(s) 11, 183
TspRI CASTG 2 cut(s) 66, 161
VneI GTGCAC 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.