pycom17g05060

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
3519775 .. 3520188
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05060.1

Sequence Viewer

Length: 414 bp
ATGGCTTCGGTTATCAAAAATGTTTTTCTGCTTGTGATTCTAGTGTTGTTCTTAACTCTCTGCGATGCTGGAGTTGACTCCACAGTCACAATGACTAATGATTTGGGTGCAGAGTTGACCGTTCACTGTAAATCGGGAGACAATGATCTTGGTTCGCATGTGGTACCTGTTCAAGGCACCTATGAATTTTCATTTGGTACCCATGCTTTTGAGCGTACACTATTCTTCTGCAACTTCCAATGGTCGGGAAATTATCACTACTTCGACATTTACATACAAGGCAGAGATTTGCAATGGTGCGTTAAATGTAAATGGAGTATAAGACCAGAGGGTCCGTTCAGGTGGAATCCATATCAGAAGACATGGGAACCTTTTAAGTGGAACGAGGATCAACCGAAATTAGTTGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.86

Weight (kDa)

5.72

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 123 3.5e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 83, 330
Acc65I GGTACC 2 cut(s) 163, 197
AccB1I GGYRCC 3 cut(s) 163, 176, 197
AclWI GGATC 1 cut(s) 396
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 3 cut(s) 165, 199, 217
AfiI CCNNNNNNNGG 2 cut(s) 173, 244
AgsI TTSAA 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
Asp718I GGTACC 2 cut(s) 163, 197
AspS9I GGNCC 1 cut(s) 332
AvaII GGWCC 1 cut(s) 332
BanI GGYRCC 3 cut(s) 163, 176, 197
BbsI GAAGAC 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 5 cut(s) 165, 178, 199, 333, 369
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 244
Bse3DI GCAATG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 173, 244
BseMI GCAATG 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 129
BshNI GGYRCC 3 cut(s) 163, 176, 197
BslI CCNNNNNNNGG 2 cut(s) 173, 244
BsmAI GTCTC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 145, 388
BspLI GGNNCC 5 cut(s) 165, 178, 199, 333, 369
BspPI GGATC 1 cut(s) 396
BspT107I GGYRCC 3 cut(s) 163, 176, 197
BsrDI GCAATG 1 cut(s) 299
BssMI GATC 2 cut(s) 145, 388
Bst4CI ACNGT 3 cut(s) 85, 121, 128
BstENI CCTNNNNNAGG 1 cut(s) 171
BstKTI GATC 2 cut(s) 148, 391
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 145, 388
BstNSI RCATGY 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 365
BtgZI GCGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 3 cut(s) 164, 198, 216
CviAII CATG 3 cut(s) 158, 203, 363
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 3 cut(s) 164, 198, 216
DpnI GATC 2 cut(s) 147, 390
DpnII GATC 2 cut(s) 145, 388
DrdI GACNNNNNNGTC 2 cut(s) 83, 330
DseDI GACNNNNNNGTC 2 cut(s) 83, 330
Eco47I GGWCC 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 171
FaeI CATG 3 cut(s) 161, 206, 366
FaiI YATR 7 cut(s) 159, 183, 204, 275, 320, 352, 364
FatI CATG 3 cut(s) 157, 202, 362
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 90
Hin1II CATG 3 cut(s) 161, 206, 366
HincII GTYRAC 2 cut(s) 76, 117
HindII GTYRAC 2 cut(s) 76, 117
HinfI GANTC 3 cut(s) 37, 77, 346
Hpy166II GTNNAC 4 cut(s) 76, 117, 124, 218
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 2 cut(s) 135, 246
Hpy8I GTNNAC 4 cut(s) 76, 117, 124, 218
HpyCH4III ACNGT 3 cut(s) 85, 121, 128
HpyCH4V TGCA 3 cut(s) 110, 231, 292
Hsp92II CATG 3 cut(s) 161, 206, 366
KpnI GGTACC 2 cut(s) 167, 201
Kzo9I GATC 2 cut(s) 145, 388
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 4 cut(s) 54, 180, 325, 339
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 147, 390
MboI GATC 2 cut(s) 145, 388
MboII GAAGA 2 cut(s) 217, 370
MluCI AATT 3 cut(s) 185, 250, 398
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 322, 379
MseI TTAA 4 cut(s) 53, 303, 375, 412
NdeII GATC 2 cut(s) 145, 388
NlaIII CATG 3 cut(s) 161, 206, 366
NlaIV GGNNCC 5 cut(s) 165, 178, 199, 333, 369
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 161
PfeI GAWTC 2 cut(s) 37, 346
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 5 cut(s) 165, 178, 199, 333, 369
PspPI GGNCC 1 cut(s) 332
RsaI GTAC 3 cut(s) 165, 199, 217
RsaNI GTAC 3 cut(s) 164, 198, 216
SaqAI TTAA 4 cut(s) 53, 303, 375, 412
Sau3AI GATC 2 cut(s) 145, 388
Sau96I GGNCC 1 cut(s) 332
SchI GAGTC 1 cut(s) 71
SetI ASST 4 cut(s) 169, 182, 344, 373
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 332
Sse9I AATT 3 cut(s) 185, 250, 398
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 85, 121, 128
TaqI TCGA 1 cut(s) 264
TasI AATT 3 cut(s) 185, 250, 398
TfiI GAWTC 2 cut(s) 37, 346
Tru1I TTAA 4 cut(s) 53, 303, 375, 412
Tru9I TTAA 4 cut(s) 53, 303, 375, 412
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 180, 198
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 332
XagI CCTNNNNNAGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.