RchiOBHm_Chr4g0399641

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000577
Physical Location & Seq
Reverse (-)
16946591 .. 16947004
414 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37175

Sequence Viewer

Length: 414 bp
ATGGCTTCATTCATGAAAAATGTGGTTCTGCTAACGCTGCTTTTTCTGTTGTCAATGACAATGTCTAGTGATGGACTTGATCTCGGACGCAACAGAAGACATATCACCATCTCAAATGGTTTGGACAAGGCTCTTACTGTTCACTGCAAATCCGGGGATGATGATATTGGTGCGAAAACCCTCCCCATTTCTGGAGTCTATGAATTCGGTTTTATACCCAGATTCTTACCAAAAACTACACTGTACTTCTGTAGTTTTCAGTGGGAAGGTAATTTTCACTACTACGACGTGTATACTGAGGGAATCGATTGTAGTGAGTGTAAGTATTCGGTAAGGGCCCTTGGCCGGGTATCCTTCATATGCAGGTATAACTATGGCACAGAGAAAGATGATTGCTTTGAATGGAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

137

Amino Acids

15.72

Weight (kDa)

6.27

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 135 2.4e-18 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 191, 345, 346
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 401
AjiI CACGTC 1 cut(s) 289
AoxI GGCC 2 cut(s) 336, 343
ApaI GGGCCC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 336, 337
AsuC2I CCSGG 2 cut(s) 154, 347
AsuHPI GGTGA 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 65, 116
BciVI GTATCC 1 cut(s) 361
BcnI CCSGG 2 cut(s) 154, 347
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 354
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 154, 347
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 336, 337
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 2 cut(s) 154, 347
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 154, 347
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 153, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 345, 346
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 153, 340
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 3 cut(s) 191, 345, 346
BseMII CTCAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 2 cut(s) 338, 345
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 2 cut(s) 153, 346
BslI CCNNNNNNNGG 3 cut(s) 191, 345, 346
BsnI GGCC 2 cut(s) 338, 345
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 2 cut(s) 338, 345
BspCNI CTCAG 1 cut(s) 289
BspDI ATCGAT 1 cut(s) 306
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 153, 340
BssMI GATC 1 cut(s) 79
BssNAI GTATAC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 340
Bst1107I GTATAC 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 139, 243
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 152, 345
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 103
BstZ17I GTATAC 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 306
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 338, 345
BsuTUI ATCGAT 1 cut(s) 306
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 142, 239, 266
BveI ACCTGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 336, 337
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 13
CviJI RGCY 4 cut(s) 5, 131, 338, 345
CviKI_1 RGCY 4 cut(s) 5, 131, 338, 345
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 340
EcoO109I RGGNCCY 2 cut(s) 336, 337
EcoRI GAATTC 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 1 cut(s) 16
FaiI YATR 9 cut(s) 14, 102, 201, 215, 294, 359, 361, 369, 375
FatI CATG 1 cut(s) 12
FauNDI CATATG 1 cut(s) 359
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 338, 345
HapII CCGG 2 cut(s) 153, 346
HgaI GACGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 16
HinfI GANTC 3 cut(s) 195, 222, 303
HpaII CCGG 2 cut(s) 153, 346
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 2 cut(s) 142, 294
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 13, 192
Hpy8I GTNNAC 2 cut(s) 142, 294
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 2 cut(s) 260, 364
HpyCH4III ACNGT 2 cut(s) 139, 243
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 147, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 5 cut(s) 166, 177, 232, 349, 359
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 288
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 203, 271
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 2 cut(s) 191, 292
MspI CCGG 2 cut(s) 153, 346
MspR9I CCNGG 2 cut(s) 154, 347
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 2 cut(s) 154, 347
NdeI CATATG 1 cut(s) 359
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 338
PagI TCATGA 1 cut(s) 12
PfeI GAWTC 2 cut(s) 222, 303
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 338
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 2 cut(s) 336, 337
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 336, 337
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 2 cut(s) 154, 347
SduI GDGCHC 1 cut(s) 340
SetI ASST 3 cut(s) 271, 291, 368
SfcI CTRYAG 1 cut(s) 250
Sse9I AATT 2 cut(s) 203, 271
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 152, 345
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 139, 243
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 203, 271
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 2 cut(s) 222, 303
TscAI CASTG 3 cut(s) 149, 246, 266
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 29, 216, 346
TspRI CASTG 3 cut(s) 149, 246, 266
Tth111I GACNNNGTC 1 cut(s) 61
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 293
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.