MD09G1134200.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000577
Physical Location & Seq
Forward (+)
10319288 .. 10319692
405 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1134200.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGCTTCGTTCACTGGAAACACCTTGTTGCTGGTGCTGCTTATATTTTTCACAATGACCATGTTTTGTGCAGGAGTAGGTTCGAGAAGACACATCAAAGTGACAAATGATTTGGGCGAAAACTCAACCCTAACCGTCCATTGCAAATCCAAGAACGATGATATTGGTGAAAAAGTGCTTGCCCTTCATGATTGGTTTGAATTTAGCTTTCGACCTAACGTATGGGACAGTACGCTATACTACTGCAGTTTTGCGTGGCCAAATAATTTTAAGTGGTTCGATATATACATAGACAAGAGAGACCGAGATGATTGTCGTTTGTGTTACTATAGTGTAGTACCAAATGGCCCATGCAGGTTTAATTTTGACACCAACAAATATGACAATTGTTTTAAGTGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

135

Amino Acids

15.85

Weight (kDa)

6.79

Isoelectric Point (pI)

18.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 133 5.3e-28 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 2 cut(s) 232, 339
AgsI TTSAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 294
AoxI GGCC 2 cut(s) 257, 346
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 94, 126
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 179
BalI TGGCCA 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 294
BfmI CTRYAG 2 cut(s) 244, 328
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 139
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 2 cut(s) 259, 348
BslFI GGGAC 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 259, 348
Bso31I GGTCTC 1 cut(s) 294
BspANI GGCC 2 cut(s) 259, 348
BspHI TCATGA 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 248
BspMI ACCTGC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 19
Bst4CI ACNGT 2 cut(s) 136, 230
BstC8I GCNNGC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSFI CTRYAG 2 cut(s) 244, 328
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 259, 348
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 180
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 2 cut(s) 231, 338
CviAII CATG 3 cut(s) 61, 188, 351
CviJI RGCY 4 cut(s) 5, 207, 259, 348
CviKI_1 RGCY 4 cut(s) 5, 207, 259, 348
CviQI GTAC 2 cut(s) 231, 338
EaeI YGGCCR 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 294
FaeI CATG 3 cut(s) 64, 191, 354
FaqI GGGAC 1 cut(s) 239
FatI CATG 3 cut(s) 60, 187, 350
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 259, 348
Hin1II CATG 3 cut(s) 64, 191, 354
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 84, 188
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 2 cut(s) 136, 230
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 71, 144, 246, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 3 cut(s) 64, 191, 354
LpnPI CCDG 3 cut(s) 17, 57, 340
Lsp1109I GCAGC 1 cut(s) 24
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 100, 323
MboII GAAGA 1 cut(s) 99
MfeI CAATTG 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 259
MluCI AATT 4 cut(s) 200, 265, 361, 385
MluNI TGGCCA 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 259
MseI TTAA 3 cut(s) 270, 360, 393
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 259
MunI CAATTG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 64, 191, 354
NmuCI GTSAC 1 cut(s) 100
PagI TCATGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 347
PstI CTGCAG 1 cut(s) 248
RsaI GTAC 2 cut(s) 232, 339
RsaNI GTAC 2 cut(s) 231, 338
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 3 cut(s) 270, 360, 393
SatI GCNGC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 347
SetI ASST 6 cut(s) 26, 82, 209, 217, 222, 359
SfcI CTRYAG 2 cut(s) 244, 328
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 4 cut(s) 200, 265, 361, 385
TaaI ACNGT 2 cut(s) 136, 230
TaiI ACGT 1 cut(s) 222
TaqI TCGA 3 cut(s) 83, 211, 279
TaqII GACCGA 1 cut(s) 318
TasI AATT 4 cut(s) 200, 265, 361, 385
Tru1I TTAA 3 cut(s) 270, 360, 393
Tru9I TTAA 3 cut(s) 270, 360, 393
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 1 cut(s) 19
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.