RchiOBHm_Chr4g0389011

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000577
Physical Location & Seq
Forward (+)
4185024 .. 4186772
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36218

Sequence Viewer

Length: 246 bp
ATGGCTTCGTTCGTTGGAAGAACAGTGAAGCTAATATTGCTTTTGCTATTCTTAACAACCACATGTGATGCTAAAACATATGTTGGAATCACTAATGATTTGGGCGGAGGAATGAATCTCACCTTTCACTGTAAATCCGCAGATGATGAGCTCGGCGTCAAAGTGCTTCCTCCCCAACAATACTATGAGTTCAGTTTCAAACCTACCTTGATAGGCCGAACAGATTTCTATTGCAGTTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

81

Amino Acids

9.05

Weight (kDa)

6.52

Isoelectric Point (pI)

21.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 81 9.1e-15 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 105, 138
AcyI GRCGYC 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 199, 242
AluBI AGCT 2 cut(s) 31, 151
AluI AGCT 2 cut(s) 31, 151
Alw21I GWGCWC 1 cut(s) 153
AoxI GGCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BmsI GCATC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 156
BshFI GGCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 153
BsnI GGCC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 153
BspACI CCGC 2 cut(s) 105, 138
BspANI GGCC 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 25, 131
BstACI GRCGYC 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 30, 127
CseI GACGC 1 cut(s) 145
CviAII CATG 1 cut(s) 63
CviJI RGCY 4 cut(s) 5, 31, 151, 216
CviKI_1 RGCY 4 cut(s) 5, 31, 151, 216
EciI GGCGGA 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 1 cut(s) 66
FaiI YATR 4 cut(s) 64, 79, 81, 186
FatI CATG 1 cut(s) 62
FauNDI CATATG 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 216
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 66
HinfI GANTC 2 cut(s) 87, 115
HphI GGTGA 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 25, 131
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 66
LweI GCATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 101, 180
MseI TTAA 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 79
NlaIII CATG 1 cut(s) 66
NmeAIII GCCGAG 1 cut(s) 132
NspI RCATGY 1 cut(s) 66
PciI ACATGT 1 cut(s) 62
PfeI GAWTC 2 cut(s) 87, 115
PscI ACATGT 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 153
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 53
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 33, 125, 153, 205, 209
SfaNI GCATC 1 cut(s) 58
SgeI CNNG 3 cut(s) 75, 164, 220
SsiI CCGC 2 cut(s) 105, 138
SspI AATATT 1 cut(s) 36
SstI GAGCTC 1 cut(s) 153
TaaI ACNGT 2 cut(s) 25, 131
TfiI GAWTC 2 cut(s) 87, 115
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 2 cut(s) 30, 134
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 2 cut(s) 30, 134
XceI RCATGY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.