AT3G16960

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000577
Physical Location & Seq
Reverse (-)
5791812 .. 5792264
453 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16960.1

Sequence Viewer

Length: 345 bp
ATGGGTGCTCTAGCAGAACTTGTAGCTCTCATTATCGTTATGTGTGCAAGTGTAACAATGTCCCTCGCTCAAAACCCCATGGCTTCACCACCAAGTGTTGAGAACCCAAATACAACAGTGGTGATACATAACGCTCTTTCAGGTTATTGGCCAATGGCATACCATTGTGCATCAAAAGACGTTGATTTTGGACTCCGACGTATGCTAGCTGAAAGAGACCAAGAATCTGCAATGTTTGGATGCAAAAGATGCGAATGGAAGATACGTGAAGAAGGACCTTGCAAACTGAACAAAAAGACTGGAATGTTTGATCTTTGTCCTCCTTGGGATTCTCAAAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

114

Amino Acids

12.67

Weight (kDa)

6.07

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 95
AluBI AGCT 2 cut(s) 26, 209
AluI AGCT 2 cut(s) 26, 209
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 210
AoxI GGCC 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 78, 133
AsuNHI GCTAGC 1 cut(s) 205
AvaII GGWCC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 2 cut(s) 11, 206
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmsI GCATC 3 cut(s) 179, 230, 239
BmtI GCTAGC 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 78, 323
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 78, 323
BseGI GGATG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 304
BshFI GGCC 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 10
BslFI GGGAC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 151
Bso31I GGTCTC 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 1 cut(s) 310
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 1 cut(s) 151
BspOI GCTAGC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 237
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 78, 323
BssMI GATC 1 cut(s) 310
BssT1I CCWWGG 2 cut(s) 78, 323
Bst4CI ACNGT 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 207
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 26, 83, 151, 209
CviKI_1 RGCY 4 cut(s) 26, 83, 151, 209
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DraIII CACNNNGTG 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 78, 323
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 275
EcoT14I CCWWGG 2 cut(s) 78, 323
ErhI CCWWGG 2 cut(s) 78, 323
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 41, 80, 129, 160, 203
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 78
FokI GGATG 1 cut(s) 252
FspBI CTAG 2 cut(s) 11, 206
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 1 cut(s) 82
HinfI GANTC 3 cut(s) 192, 224, 329
HphI GGTGA 2 cut(s) 78, 133
Hpy188I TCNGA 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 3 cut(s) 180, 199, 265
HpyCH4V TGCA 5 cut(s) 47, 170, 230, 243, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpySE526I ACGT 3 cut(s) 180, 199, 265
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 2 cut(s) 126, 285
LweI GCATC 3 cut(s) 179, 230, 239
MaeI CTAG 2 cut(s) 11, 206
MaeII ACGT 3 cut(s) 180, 199, 265
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 2 cut(s) 271, 281
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 151
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 74, 330
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
Msp20I TGGCCA 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 249
NcoI CCATGG 1 cut(s) 78
NdeII GATC 1 cut(s) 310
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 82
PfeI GAWTC 2 cut(s) 224, 329
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 10
SetI ASST 7 cut(s) 28, 145, 183, 202, 211, 268, 280
SfaNI GCATC 3 cut(s) 179, 230, 239
SinI GGWCC 1 cut(s) 275
SspI AATATT 1 cut(s) 340
SspMI CTAG 2 cut(s) 11, 206
StyI CCWWGG 2 cut(s) 78, 323
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 3 cut(s) 183, 202, 268
TfiI GAWTC 2 cut(s) 224, 329
TscAI CASTG 1 cut(s) 123
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 275
XspI CTAG 2 cut(s) 11, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.