MD07G1006200.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000577
Physical Location & Seq
Forward (+)
601875 .. 602231
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1006200.v1.1.491

Sequence Viewer

Length: 357 bp
ATGTGTCTACCCAGGACGTACGTCAATATCAACAATTTACTGCAGACGGATCTTCCTCTCCATTGTAAATCTAAGGAAGATGATCTTGGTGCTCATGTACTGCCTCCTCATGGGTCGTTTGGATTCAATTTTCGACCAAATGTTGGGTGTTCAACATTATATTTCTGCAATTTTGAGTGGCGCGGCGGGTCTCATTGGTTTGATATATACATAGAAGACAGAGATGCAAATGAGTGTAGGCACTGCAATTGGTTGATCATAGAAAAAGGTGCGTTTAGGTTAGTTGAAGGCAAGGCTAGGCTAATAGATGAGTGCTATGAGTGGAAAAAGTCGGCTCCCAAGTTCATCATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

119

Amino Acids

13.79

Weight (kDa)

6.5

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 8 - 108 1.7e-23 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AccI GTMKAC 1 cut(s) 7
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 183, 186
AclWI GGATC 1 cut(s) 57
AfaI GTAC 2 cut(s) 20, 99
AfiI CCNNNNNNNGG 2 cut(s) 110, 143
AgsI TTSAA 3 cut(s) 127, 153, 287
AjnI CCWGG 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 13
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 214
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 143
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 110, 143
BseRI GAGGAG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 94
BsiWI CGTACG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 110, 143
BsmAI GTCTC 1 cut(s) 195
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 49, 82, 255
BspACI CCGC 2 cut(s) 183, 186
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 3 cut(s) 49, 82, 255
Bst2UI CCWGG 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 72
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 3 cut(s) 52, 85, 258
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 3 cut(s) 49, 82, 255
BstNI CCWGG 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 41
BstUI CGCG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
CfoI GCGC 1 cut(s) 183
Csp6I GTAC 2 cut(s) 19, 98
CviAII CATG 2 cut(s) 95, 110
CviJI RGCY 3 cut(s) 296, 301, 335
CviKI_1 RGCY 3 cut(s) 296, 301, 335
CviQI GTAC 2 cut(s) 19, 98
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 51, 84, 257
DpnII GATC 3 cut(s) 49, 82, 255
Eco31I GGTCTC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 11
FaeI CATG 2 cut(s) 98, 113
FaiI YATR 8 cut(s) 96, 111, 160, 206, 208, 212, 260, 318
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 2 cut(s) 94, 109
FauI CCCGC 1 cut(s) 179
FbaI TGATCA 1 cut(s) 255
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 183
Hin1II CATG 2 cut(s) 98, 113
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 281
HpyCH4IV ACGT 2 cut(s) 17, 21
HpyCH4V TGCA 4 cut(s) 43, 168, 227, 246
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 2 cut(s) 17, 21
Hsp92II CATG 2 cut(s) 98, 113
HspAI GCGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 49, 82, 255
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 1 cut(s) 25
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 297
MaeII ACGT 2 cut(s) 17, 21
MalI GATC 3 cut(s) 51, 84, 257
MboI GATC 3 cut(s) 49, 82, 255
MboII GAAGA 3 cut(s) 44, 89, 227
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 4 cut(s) 34, 127, 169, 247
MnlI CCTC 3 cut(s) 66, 114, 117
MseI TTAA 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 13
MunI CAATTG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 183
NdeII GATC 3 cut(s) 49, 82, 255
NlaIII CATG 2 cut(s) 98, 113
NlaIV GGNNCC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 123
Pfl23II CGTACG 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 1 cut(s) 185
PshAI GACNNNNGTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 45
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 2 cut(s) 20, 99
RsaNI GTAC 2 cut(s) 19, 98
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 3 cut(s) 49, 82, 255
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 94
SetI ASST 4 cut(s) 20, 24, 271, 281
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 34, 127, 169, 247
SsiI CCGC 2 cut(s) 183, 186
SspMI CTAG 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 11
TaiI ACGT 2 cut(s) 20, 24
TaqI TCGA 1 cut(s) 133
TasI AATT 4 cut(s) 34, 127, 169, 247
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 334
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 7
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.