RchiOBHm_Chr3g0496401

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000577
Physical Location & Seq
Forward (+)
47184699 .. 47185139
441 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45873

Sequence Viewer

Length: 441 bp
ATGGCTTTACCTACTAGATATGTTCTGTTTTTAACCGTGCTTCTTCTGTTAAAAAATACATGTGAAGCACAGATAGTCAAGCACAAAACTCATCTCCAGATCTCTAATTACATGGAGACTGAGCTCACTATTCATTGTAAATCCAAGGACAACGATATCGGTGTTAAGACACTGCCTCCTCAAGGCTCCTATGCGTTCAGCTTCCGACCAAACTTTTGGAACTCCACTCTATTCTTTTGCAAGTTCACCTGGAAGGATGGATCTCACTGGTTTGATATTTACGTACAAACCAGAGACCAACATTCATGCGTAAAGAACTGTAACTGGTTCGTTGTAAAGAATGGAAGTGGTGTGTGCCGGTTAATTGAAGGGGAGGCTCATTTGGTAGATATGTGCTACCCGTGGAACGATGCGTCTCATGCAGAATCAAGTCATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

146

Amino Acids

16.96

Weight (kDa)

7.66

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 135 1.5e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 2 cut(s) 124, 201
AluI AGCT 2 cut(s) 124, 201
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 3 cut(s) 110, 288, 420
AlwI GGATC 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AsuHPI GGTGA 1 cut(s) 238
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 250
BcoDI GTCTC 3 cut(s) 110, 288, 420
BfaI CTAG 1 cut(s) 15
BglII AGATCT 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 283
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 144, 401
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 357
Bse1I ACTGG 2 cut(s) 272, 329
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 144, 401
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 272, 329
BseRI GAGGAG 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 3 cut(s) 110, 288, 420
BsmBI CGTCTC 1 cut(s) 420
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 99, 260
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 357
BsrI ACTGG 2 cut(s) 272, 329
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 144, 401
BssMI GATC 2 cut(s) 99, 260
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 2 cut(s) 37, 320
BstBAI YACGTR 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 401
BstENI CCTNNNNNAGG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 2 cut(s) 102, 263
BstMAI GTCTC 3 cut(s) 110, 288, 420
BstMBI GATC 2 cut(s) 99, 260
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 248
BstSNI TACGTA 1 cut(s) 283
BstX2I RGATCY 2 cut(s) 99, 260
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 2 cut(s) 99, 260
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 170, 265
Cfr10I RCCGGY 1 cut(s) 357
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 284
CviAII CATG 4 cut(s) 60, 112, 306, 419
CviJI RGCY 5 cut(s) 5, 124, 186, 201, 377
CviKI_1 RGCY 5 cut(s) 5, 124, 186, 201, 377
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 1 cut(s) 120
DpnI GATC 2 cut(s) 101, 262
DpnII GATC 2 cut(s) 99, 260
Ecl136II GAGCTC 1 cut(s) 124
Eco105I TACGTA 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 4 cut(s) 63, 115, 309, 422
FaiI YATR 7 cut(s) 21, 61, 113, 192, 307, 392, 420
FatI CATG 4 cut(s) 59, 111, 305, 418
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 402
Hin1II CATG 4 cut(s) 63, 115, 309, 422
HinfI GANTC 1 cut(s) 425
HpaII CCGG 1 cut(s) 358
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 246
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 247, 362
HpyCH4III ACNGT 2 cut(s) 37, 320
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 240, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 4 cut(s) 63, 115, 309, 422
Kzo9I GATC 2 cut(s) 99, 260
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 110, 235, 253, 262, 304, 310, 371
LweI GCATC 1 cut(s) 400
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 320
MalI GATC 2 cut(s) 101, 262
MboI GATC 2 cut(s) 99, 260
MboII GAAGA 1 cut(s) 35
MflI RGATCY 2 cut(s) 99, 260
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 2 cut(s) 106, 363
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 186, 189, 367
MseI TTAA 5 cut(s) 32, 50, 165, 362, 439
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 419
NdeII GATC 2 cut(s) 99, 260
NlaIII CATG 4 cut(s) 63, 115, 309, 422
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 63
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 283
PscI ACATGT 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 187
PsuI RGATCY 2 cut(s) 99, 260
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SacI GAGCTC 1 cut(s) 126
SaqAI TTAA 5 cut(s) 32, 50, 165, 362, 439
Sau3AI GATC 2 cut(s) 99, 260
ScrFI CCNGG 1 cut(s) 250
SduI GDGCHC 1 cut(s) 126
SetI ASST 5 cut(s) 13, 126, 203, 251, 285
SfaNI GCATC 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SnaBI TACGTA 1 cut(s) 283
Sse9I AATT 2 cut(s) 106, 363
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 37, 320
TaiI ACGT 1 cut(s) 285
TasI AATT 2 cut(s) 106, 363
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 5 cut(s) 32, 50, 165, 362, 439
Tru9I TTAA 5 cut(s) 32, 50, 165, 362, 439
TscAI CASTG 2 cut(s) 177, 272
TspDTI ATGAA 2 cut(s) 122, 294
TspRI CASTG 2 cut(s) 177, 272
XagI CCTNNNNNAGG 1 cut(s) 180
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.