FvH4_4g02030

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000577
Physical Location & Seq
Forward (+)
1808308 .. 1808836
529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02030.t1

Sequence Viewer

Length: 414 bp
ATGGGTTCCTCCATTGGAAGAGCAATGATGTTGATGTTGCTTGTGTTGCTCTTCACAACTGTTTGTGACGCAAGCTGGGAAAAACATGTAAGAGTTACAAATCAAATACCAGGCGTCACCCTCAACGTTCATTGCAAATCCGCTGATGATGATCTCGGTCTCCAAGAGCTTGCCCCTAATGCTTTCTTTGAGTTCAGTTTTCGATCCAGTTTTATAGGGGACACTGATTTCTACTGTAGTTTCCAGTGGCCTGGTGCATCACTAGAGTGGTTTGATATATATATCAGCAGTAGAGACCTCACAGTTTGCGACAAGTGTTGGTGGTCTGTAAGACCTACTCAAGATGGTCCTCATCCATGCATGTTGAATTGGGGAAGCGGCCAATATGAAATTTGTAAACCATGGAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

15.64

Weight (kDa)

4.97

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 135 1.8e-23 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 141, 378
AclI AACGTT 1 cut(s) 126
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 367
AjnI CCWGG 2 cut(s) 109, 250
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 2 cut(s) 75, 169
AluI AGCT 2 cut(s) 75, 169
Alw26I GTCTC 2 cut(s) 164, 288
AlwI GGATC 1 cut(s) 198
AoxI GGCC 2 cut(s) 248, 379
ApoI RAATTY 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 347
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 2 cut(s) 111, 252
BcoDI GTCTC 2 cut(s) 164, 288
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 111, 252
Bme18I GGWCC 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 111, 252
BmsI GCATC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 2 cut(s) 164, 288
BsaJI CCNNGG 1 cut(s) 401
Bse1I ACTGG 2 cut(s) 207, 244
Bse3DI GCAATG 2 cut(s) 30, 130
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 2 cut(s) 111, 252
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 150
BseMI GCAATG 2 cut(s) 30, 130
BseNI ACTGG 2 cut(s) 207, 244
BseYI CCCAGC 1 cut(s) 75
BshFI GGCC 2 cut(s) 250, 381
BslFI GGGAC 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 164, 288
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 2 cut(s) 250, 381
Bso31I GGTCTC 2 cut(s) 164, 288
Bsp143I GATC 2 cut(s) 151, 203
Bsp19I CCATGG 1 cut(s) 401
BspACI CCGC 2 cut(s) 141, 378
BspANI GGCC 2 cut(s) 250, 381
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 2 cut(s) 13, 56
BspTNI GGTCTC 2 cut(s) 164, 288
BsrDI GCAATG 2 cut(s) 30, 130
BsrI ACTGG 2 cut(s) 207, 244
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 2 cut(s) 151, 203
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 111, 252
Bst4CI ACNGT 3 cut(s) 61, 236, 304
Bst6I CTCTTC 2 cut(s) 13, 56
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 73, 171
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 154, 206
BstMAI GTCTC 2 cut(s) 164, 288
BstMBI GATC 2 cut(s) 151, 203
BstMWI GCNNNNNNNGC 2 cut(s) 46, 179
BstNI CCWGG 2 cut(s) 111, 252
BstNSI RCATGY 2 cut(s) 89, 364
BstSCI CCNGG 2 cut(s) 109, 250
BstSFI CTRYAG 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 251
BsuRI GGCC 2 cut(s) 250, 381
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 2 cut(s) 222, 251
Cac8I GCNNGC 2 cut(s) 73, 171
Cfr13I GGNCC 1 cut(s) 347
CseI GACGC 2 cut(s) 77, 103
CviAII CATG 4 cut(s) 86, 357, 361, 402
CviJI RGCY 4 cut(s) 75, 169, 250, 381
CviKI_1 RGCY 4 cut(s) 75, 169, 250, 381
DpnI GATC 2 cut(s) 153, 205
DpnII GATC 2 cut(s) 151, 203
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 13, 56
EarI CTCTTC 2 cut(s) 13, 56
Eco130I CCWWGG 1 cut(s) 401
Eco31I GGTCTC 2 cut(s) 164, 288
Eco47I GGWCC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 109, 250
EcoT14I CCWWGG 1 cut(s) 401
EcoT22I ATGCAT 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 4 cut(s) 89, 360, 364, 405
FaiI YATR 9 cut(s) 87, 215, 278, 280, 282, 358, 362, 387, 403
FaqI GGGAC 1 cut(s) 233
FatI CATG 4 cut(s) 85, 356, 360, 401
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 379
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 379
GsaI CCCAGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 250, 381
HgaI GACGC 2 cut(s) 77, 103
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 89, 360, 364, 405
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 398
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 1 cut(s) 398
HpyCH4III ACNGT 3 cut(s) 61, 236, 304
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 135, 257, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 179
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 89, 360, 364, 405
Kzo9I GATC 2 cut(s) 151, 203
LguI GCTCTTC 2 cut(s) 13, 56
LpnPI CCDG 7 cut(s) 61, 96, 123, 220, 237, 257, 264
LweI GCATC 1 cut(s) 266
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 65, 94, 115
MalI GATC 2 cut(s) 153, 205
MboI GATC 2 cut(s) 151, 203
MboII GAAGA 2 cut(s) 30, 43
MluCI AATT 2 cut(s) 367, 390
MnlI CCTC 4 cut(s) 19, 131, 308, 360
Mph1103I ATGCAT 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 265
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 111, 252
MvaI CCWGG 2 cut(s) 111, 252
MwoI GCNNNNNNNGC 2 cut(s) 46, 179
NcoI CCATGG 1 cut(s) 401
NdeII GATC 2 cut(s) 151, 203
NlaIII CATG 4 cut(s) 89, 360, 364, 405
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 2 cut(s) 65, 115
NsiI ATGCAT 1 cut(s) 362
NspI RCATGY 2 cut(s) 89, 364
OliI CACNNNNGTG 1 cut(s) 265
PciI ACATGT 1 cut(s) 85
PciSI GCTCTTC 2 cut(s) 13, 56
PkrI GCNGC 1 cut(s) 380
PscI ACATGT 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 109, 250
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 109, 250
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 265
SapI GCTCTTC 2 cut(s) 13, 56
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 2 cut(s) 151, 203
Sau96I GGNCC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 111, 252
SetI ASST 5 cut(s) 77, 129, 171, 300, 337
SfaNI GCATC 1 cut(s) 266
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 2 cut(s) 367, 390
SsiI CCGC 2 cut(s) 141, 378
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 109, 250
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 3 cut(s) 61, 236, 304
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 202
TaqII GACCGA 1 cut(s) 146
TasI AATT 2 cut(s) 367, 390
TauI GCSGC 1 cut(s) 381
TscAI CASTG 2 cut(s) 229, 251
TseFI GTSAC 2 cut(s) 65, 115
Tsp45I GTSAC 2 cut(s) 65, 115
TspDTI ATGAA 2 cut(s) 119, 402
TspRI CASTG 2 cut(s) 229, 251
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 390
XceI RCATGY 2 cut(s) 89, 364
XspI CTAG 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.