RLG00000009983

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000577
Physical Location & Seq
Reverse (-)
61520837 .. 61521368
532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009983

Sequence Viewer

Length: 360 bp
ATGCAGCATTTACGAAACATGTTAAGAGTCACAAATCAATTAGAAGGTATGACCCTCAAAGTTCACTGCAAATCCGCGGATGATGATCTCGGTCTGAAAGCACTTGCTCCTAATGCTTTCTTTGAATTCAGTTTTAAATCTAGCATTGTAGGGAACACTGATTTCTACTGCAGTTTCCAGTGGCCTAGTGGATTCGAATGGTTTGATGTATATGTGGGCACTAGAGACCGCACTGACTGCAGTAAGTGTTGGTGGTCTGTAAGAACTACTGAATATGGTCCTCATCCATGTAAGCTAGGTTGGACTGGGGCAGCGGCAAGTATGAAATCTGTAAACCGTGGAATCCAAAGTGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

120

Amino Acids

13.54

Weight (kDa)

7.64

Isoelectric Point (pI)

11.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 8 - 89 7.2e-23 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 4 cut(s) 75, 77, 229, 314
AcsI RAATTY 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 219
AoxI GGCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 4, 311
ApoI RAATTY 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 16, 323
BcoDI GTCTC 1 cut(s) 219
BfaI CTAG 4 cut(s) 141, 186, 222, 296
BfmI CTRYAG 2 cut(s) 169, 238
BisI GCNGC 3 cut(s) 5, 312, 315
BlsI GCNGC 3 cut(s) 6, 313, 316
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 315
BmuI ACTGGG 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 75, 337
Bse1I ACTGG 2 cut(s) 178, 310
Bse8I GATNNNNATC 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 75, 337
BseGI GGATG 2 cut(s) 85, 283
BseJI GATNNNNATC 1 cut(s) 84
BseNI ACTGG 2 cut(s) 178, 310
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 16, 323
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 219
BsnI GGCC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 4 cut(s) 75, 77, 229, 314
BspANI GGCC 1 cut(s) 184
BspFNI CGCG 1 cut(s) 77
BspMAI CTGCAG 2 cut(s) 173, 242
BspT104I TTCGAA 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 219
BsrI ACTGG 2 cut(s) 178, 310
BssECI CCNNGG 2 cut(s) 75, 337
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 195
BstDSI CCRYGG 2 cut(s) 75, 337
BstF5I GGATG 2 cut(s) 85, 283
BstFNI CGCG 1 cut(s) 77
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 113, 237
BstNSI RCATGY 1 cut(s) 22
BstSFI CTRYAG 2 cut(s) 169, 238
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 16, 323
BsuRI GGCC 1 cut(s) 184
BtgI CCRYGG 2 cut(s) 75, 337
BtsCI GGATG 2 cut(s) 85, 283
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 4 cut(s) 64, 156, 185, 231
Cfr13I GGNCC 1 cut(s) 278
Cfr42I CCGCGG 1 cut(s) 78
CviAII CATG 2 cut(s) 19, 288
CviJI RGCY 2 cut(s) 184, 295
CviKI_1 RGCY 2 cut(s) 184, 295
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DraI TTTAAA 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 125
FaeI CATG 2 cut(s) 22, 291
FaiI YATR 8 cut(s) 20, 50, 211, 213, 276, 289, 323, 358
FatI CATG 2 cut(s) 18, 287
Fnu4HI GCNGC 3 cut(s) 5, 312, 315
FokI GGATG 2 cut(s) 92, 270
Fsp4HI GCNGC 3 cut(s) 5, 312, 315
FspBI CTAG 4 cut(s) 141, 186, 222, 296
GluI GCNGC 3 cut(s) 5, 312, 315
HaeIII GGCC 1 cut(s) 184
Hin1II CATG 2 cut(s) 22, 291
HinfI GANTC 3 cut(s) 27, 192, 342
Hpy166II GTNNAC 3 cut(s) 64, 334, 353
Hpy188I TCNGA 1 cut(s) 96
Hpy8I GTNNAC 3 cut(s) 64, 334, 353
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 4, 69, 171, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 237
Hsp92II CATG 2 cut(s) 22, 291
KspI CCGCGG 1 cut(s) 78
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 2 cut(s) 191, 291
Lsp1109I GCAGC 2 cut(s) 16, 323
MaeI CTAG 4 cut(s) 141, 186, 222, 296
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 2 cut(s) 38, 125
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 2 cut(s) 65, 291
MseI TTAA 2 cut(s) 23, 135
MspA1I CMGCKG 2 cut(s) 77, 314
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 113, 237
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 22, 291
NmuCI GTSAC 1 cut(s) 28
NspI RCATGY 1 cut(s) 22
NspV TTCGAA 1 cut(s) 195
PciI ACATGT 1 cut(s) 18
PfeI GAWTC 2 cut(s) 192, 342
PkrI GCNGC 3 cut(s) 6, 313, 316
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PscI ACATGT 1 cut(s) 18
PspPI GGNCC 1 cut(s) 278
PstI CTGCAG 2 cut(s) 173, 242
SacII CCGCGG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 23, 135
SatI GCNGC 3 cut(s) 5, 312, 315
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 221
SetI ASST 3 cut(s) 49, 297, 301
SfcI CTRYAG 2 cut(s) 169, 238
Sfr303I CCGCGG 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 195
SgrBI CCGCGG 1 cut(s) 78
SinI GGWCC 1 cut(s) 278
Sse9I AATT 2 cut(s) 38, 125
SsiI CCGC 4 cut(s) 75, 77, 229, 314
SspMI CTAG 4 cut(s) 141, 186, 222, 296
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 195
TaqII GACCGA 1 cut(s) 80
TasI AATT 2 cut(s) 38, 125
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 192, 342
Tru1I TTAA 2 cut(s) 23, 135
Tru9I TTAA 2 cut(s) 23, 135
TscAI CASTG 4 cut(s) 71, 163, 185, 238
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 4, 311
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 338
TspRI CASTG 4 cut(s) 71, 163, 185, 238
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 22
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XspI CTAG 4 cut(s) 141, 186, 222, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.