Rorug04G0017800

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000577
Physical Location & Seq
Forward (+)
2655511 .. 2662511
7001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0017800.1

Sequence Viewer

Length: 2175 bp
ATGGGAGCGGTGCCGTCGACGCCCCGCTGGGGGAGTAGCTCCGCGGCGCGTCCGCTGGAAACGGCGGAGTACCTGATCGGGACCTTCGTCGGCGACGAGTCGTTTCCTTTGTCCTCTGATTACTGGCAGAAATTGCTCGACCTCCCTCTCAGTCTCCAATGGCCTCCTGACCGCGTTCAACAAGCTTGCGAGGCTCTTGCACAAAACAACTACAAAACCAGGCATCTCGCAAAGCTTCTGATCCATCTGGCATGGTGTTTACAAGAAGCTATTTCAACTTCTGGTGGCCCTTCTCTTGTTTATGGGAAGGCTGTTAATGCAGTGTACATCTCATCTGTCTTTTTAAAGTACCTAATTGAAAATCCAAAAAGCGACAAGATTGAAGAGTTGTACTTATCTCTAGATGAAAGTGAGCCAATGCCAACTGATATTACAAGAGATCTAAACATTGAGGATTTTGTAATGTGTAGTGTGCTTACCTTTATTGGATCAATAGATGTAAGTCCTGGTACATACCTCCTTCATTTGGAACTGCTTAACTTCATGCTGATTGCAATGTCAACTCAGCTTCTTTCTGGGCCATCCCCAGGACCAGAAGATGTGAACCCATTTCTTGATGCAGCAATGTCTCAGGAAAGCTCGTTGGTTATCTCGGTTGTTCGTAGACTGCTACTCAATTACATCACTGGACCTTCGGTACCCCTGAATAGTGCATCTTATTCTATATTTTCTGAAGGAAGCCAGCCTGGTGTTATACAAAGAGTTAGTTCTGCAGCAGCAAATTTGATGTTATTACCATTCAACTTTCTCGTCAGTTCAAGTGGTGAAGGCTCAAGAAGTCTTTTGGCTGACTGCAGTCTCCATGTGCTACTTATTCTCACTCATTATCACAAATGTGTTGTGGGCAACGAGCCAATAACAGATACAAGTAATGACACCACTACTTCAAATTCACTTTTGAAAGGGTGTAGATATTTTTCTGACAACCCTTACTGCAAGGCCTTGGAACATGCAACAGATGTTGAATTTGATCGTGTAGATACTGAGGGTAATGCACATAGTGGTCCAGTTTTGAGGTTACCTTTTGCTTCCCTGTTCGATACCCTTGGAATGTGCTTGTCTGATGAGGCTGCTGCACTTTTGCTTTACTCTTTATTGCAAGGAAATGCCGACTTTCTGGAGTATGTCTTGGTGCGAACTGATTTGGATACGCTGTTGATGCCCATCCTGGAAGCGTTATATGATGCTCCAAAAAGGACATCTAATCAAATCTACATGTTGCTGATCATACTTCTCATACTTAGTCAGGATTCATCTTTTAATGCAAGCATTCACAAATTGATACTTCCTACTGTTCCTTGGTACAAAGAACGTCTCCTCCACCAGACGTCTCTTGGTTCATTAATGGTCATTACGTTGATAAGGACAGTGCAGTATAACCTATCTAAGTTGCGGGATGTTTATCTCCATACAACTTGTCTAGCAACTTTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCCCAGAGATTGGTCAGCCTATTTGATATGCTCTCTCGGAAGTATAACAAACTAGCAGAGGTGCGTAATAATCAGATGACATTAGCCAAAGGCAACTCAATAGAAGACGATACTTCAACGGAGATGCATATATATACCGACTTCTTGAGACTTGTCCTTGAAATATTAAATGCAATTTTGACATATGCTCTGCCACGGAATCCTGAGGTTATATATGCGATAATGCACAGGCAGGAAGTATTTCAGCCTTTCAGGAATCATCCACGTTTCAATGAGCTGCTTGAAAACATTTATACAGTGTTAGATTTTTTCAATAGTCGTGTGGATGCACAAAGAACAGATGGAGAATGGTCAGTGGAAAAAGTACTTCAAGTCATAGTCATTAATTGTAGATCATGGCGTGGTGAAGGGATGAAGATGTTCACCCAGTTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTCTTTATTCCATACTTGTGGCAGCTAGTACTATCCCGCTGTGGAATCAGTTTCAATCCTCGAGCCATAAATTTGTTTCCAATTGATCAACCTTCCGAGAGTGATTATGAAGTGGCGTCCGACAATCATGTAAATGGAGAGGTGGCCAAGCATGCAGTCTTTCTTGATCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_8 Pkinase RVT_1 zf-RVT

Protein Analysis

724

Amino Acids

81.37

Weight (kDa)

5.12

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dymeclin PF09742 1 - 676 1.5e-194 Dyggve-Melchior-Clausen syndrome protein
Hid1 PF12722 380 - 537 2.4e-09 High-temperature-induced dauer-formation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1391
Acc65I GGTACC 1 cut(s) 697
AccB1I GGYRCC 3 cut(s) 10, 697, 1501
AccB7I CCANNNNNTGG 1 cut(s) 1543
AccBSI CCGCTC 1 cut(s) 8
AccI GTMKAC 2 cut(s) 17, 664
AccII CGCG 3 cut(s) 44, 49, 174
AciI CCGC 9 cut(s) 8, 25, 42, 44, 53, 65, 172, 1453, 2038
AclWI GGATC 3 cut(s) 235, 496, 2162
AcoI YGGCCR 1 cut(s) 2145
AcsI RAATTY 4 cut(s) 781, 949, 1025, 2071
AcuI CTGAAG 1 cut(s) 753
AcyI GRCGYC 3 cut(s) 20, 1388, 2117
AdeI CACNNNGTG 1 cut(s) 1061
AfaI GTAC 9 cut(s) 71, 326, 350, 392, 511, 699, 1364, 1899, 2031
AfiI CCNNNNNNNGG 5 cut(s) 29, 30, 526, 587, 1543
AflIII ACRYGT 1 cut(s) 1275
AjnI CCWGG 5 cut(s) 218, 505, 586, 745, 1227
AleI CACNNNNGTG 1 cut(s) 894
AloI GAACNNNNNNTCC 2 cut(s) 1362, 1394
AluBI AGCT 8 cut(s) 39, 185, 235, 269, 568, 639, 1810, 2026
AluI AGCT 8 cut(s) 39, 185, 235, 269, 568, 639, 1810, 2026
Alw26I GTCTC 6 cut(s) 158, 633, 863, 1379, 1395, 1675
AlwI GGATC 3 cut(s) 235, 496, 2162
Ama87I CYCGRG 1 cut(s) 2061
AoxI GGCC 5 cut(s) 161, 286, 578, 999, 2145
ApeKI GCWGC 7 cut(s) 620, 773, 776, 1130, 1133, 1810, 2023
ApoI RAATTY 4 cut(s) 781, 949, 1025, 2071
AseI ATTAAT 2 cut(s) 1403, 1917
Asp700I GAANNNNTTC 2 cut(s) 1773, 1952
Asp718I GGTACC 1 cut(s) 697
AspLEI GCGC 2 cut(s) 49, 1968
AspS9I GGNCC 6 cut(s) 81, 287, 578, 590, 689, 1064
AsuHPI GGTGA 3 cut(s) 836, 1948, 1949
AvaI CYCGRG 1 cut(s) 2061
AvaII GGWCC 4 cut(s) 81, 590, 689, 1064
AxyI CCTNAGG 1 cut(s) 1737
BalI TGGCCA 1 cut(s) 2147
BanI GGYRCC 3 cut(s) 10, 697, 1501
BbsI GAAGAC 1 cut(s) 1644
BbvI GCAGC 7 cut(s) 632, 785, 788, 1117, 1120, 1797, 2035
BccI CCATC 4 cut(s) 252, 589, 1232, 1868
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 5 cut(s) 220, 507, 588, 747, 1229
BciVI GTATCC 1 cut(s) 1201
BclI TGATCA 2 cut(s) 1284, 2086
BcoDI GTCTC 6 cut(s) 158, 633, 863, 1379, 1395, 1675
BfaI CTAG 4 cut(s) 401, 1481, 1586, 2027
BfmI CTRYAG 2 cut(s) 771, 853
BfuI GTATCC 1 cut(s) 1201
BglII AGATCT 1 cut(s) 439
BisI GCNGC 8 cut(s) 45, 621, 774, 777, 1131, 1134, 1811, 2024
BlsI GCNGC 8 cut(s) 46, 622, 775, 778, 1132, 1135, 1812, 2025
BmcAI AGTACT 2 cut(s) 1899, 2031
Bme1390I CCNGG 5 cut(s) 220, 507, 588, 747, 1229
Bme18I GGWCC 4 cut(s) 81, 590, 689, 1064
BmeT110I CYCGRG 1 cut(s) 2061
BmgT120I GGNCC 6 cut(s) 81, 287, 578, 590, 689, 1064
BmiI GGNNCC 4 cut(s) 12, 82, 699, 1503
BmrFI CCNGG 5 cut(s) 220, 507, 588, 747, 1229
BmrI ACTGGG 1 cut(s) 1954
BmsI GCATC 8 cut(s) 232, 607, 722, 1209, 1234, 1541, 1647, 1849
BmuI ACTGGG 1 cut(s) 1954
BoxI GACNNNNGTC 2 cut(s) 86, 855
BpiI GAAGAC 1 cut(s) 1644
BpmI CTGGAG 1 cut(s) 1199
BpuEI CTTGAG 2 cut(s) 817, 1699
BsaBI GATNNNNATC 2 cut(s) 1223, 1461
BsaHI GRCGYC 3 cut(s) 20, 1388, 2117
BsaJI CCNNGG 6 cut(s) 42, 586, 1002, 1105, 1358, 1727
BsaXI ACNNNNNCTCC 2 cut(s) 1362, 1392
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 30, 526, 587, 1543
Bse1I ACTGG 4 cut(s) 128, 691, 1067, 1960
Bse21I CCTNAGG 1 cut(s) 1737
Bse3DI GCAATG 2 cut(s) 561, 630
Bse8I GATNNNNATC 2 cut(s) 1223, 1461
BseBI CCWGG 5 cut(s) 220, 507, 588, 747, 1229
BseDI CCNNGG 6 cut(s) 42, 586, 1002, 1105, 1358, 1727
BseGI GGATG 8 cut(s) 581, 1224, 1462, 1532, 1792, 1864, 1950, 1990
BseJI GATNNNNATC 2 cut(s) 1223, 1461
BseLI CCNNNNNNNGG 5 cut(s) 29, 30, 526, 587, 1543
BseMI GCAATG 2 cut(s) 561, 630
BseMII CTCAG 5 cut(s) 163, 578, 644, 1035, 1728
BseNI ACTGG 4 cut(s) 128, 691, 1067, 1960
BseRI GAGGAG 2 cut(s) 1367, 2012
BseXI GCAGC 7 cut(s) 632, 785, 788, 1117, 1120, 1797, 2035
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 2 cut(s) 1119, 1451
Bsh1236I CGCG 3 cut(s) 44, 49, 174
BshFI GGCC 5 cut(s) 163, 288, 580, 1001, 2147
BshNI GGYRCC 3 cut(s) 10, 697, 1501
BsiHKCI CYCGRG 1 cut(s) 2061
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 5 cut(s) 29, 30, 526, 587, 1543
BsmAI GTCTC 6 cut(s) 158, 633, 863, 1379, 1395, 1675
BsmBI CGTCTC 2 cut(s) 1379, 1395
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 1329
BsnI GGCC 5 cut(s) 163, 288, 580, 1001, 2147
BsoBI CYCGRG 1 cut(s) 2061
Bsp1407I TGTACA 1 cut(s) 324
Bsp143I GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
BspACI CCGC 9 cut(s) 8, 25, 42, 44, 53, 65, 172, 1453, 2038
BspANI GGCC 5 cut(s) 163, 288, 580, 1001, 2147
BspCNI CTCAG 5 cut(s) 162, 577, 643, 1036, 1729
BspFNI CGCG 3 cut(s) 44, 49, 174
BspLI GGNNCC 4 cut(s) 12, 82, 699, 1503
BspMAI CTGCAG 2 cut(s) 775, 857
BspPI GGATC 3 cut(s) 235, 496, 2162
BspT107I GGYRCC 3 cut(s) 10, 697, 1501
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 561, 630
BsrGI TGTACA 1 cut(s) 324
BsrI ACTGG 4 cut(s) 128, 691, 1067, 1960
BssECI CCNNGG 6 cut(s) 42, 586, 1002, 1105, 1358, 1727
BssMI GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
BssNI GRCGYC 3 cut(s) 20, 1388, 2117
BssT1I CCWWGG 3 cut(s) 1002, 1105, 1358
Bst2UI CCWGG 5 cut(s) 220, 507, 588, 747, 1229
Bst4CI ACNGT 4 cut(s) 1354, 1429, 1517, 1831
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 3 cut(s) 20, 1388, 2117
BstAPI GCANNNNNTGC 1 cut(s) 133
BstAUI TGTACA 1 cut(s) 324
BstC8I GCNNGC 4 cut(s) 187, 743, 1327, 2154
BstDEI CTNAG 7 cut(s) 149, 564, 630, 1044, 1301, 1446, 1737
BstDSI CCRYGG 2 cut(s) 42, 1727
BstEII GGTNACC 1 cut(s) 1077
BstF5I GGATG 8 cut(s) 581, 1224, 1462, 1532, 1792, 1864, 1950, 1990
BstFNI CGCG 3 cut(s) 44, 49, 174
BstHHI GCGC 2 cut(s) 49, 1968
BstKTI GATC 9 cut(s) 78, 243, 442, 491, 1033, 1287, 1928, 2089, 2170
BstMAI GTCTC 6 cut(s) 158, 633, 863, 1379, 1395, 1675
BstMBI GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
BstMWI GCNNNNNNNGC 8 cut(s) 19, 133, 191, 317, 1219, 1490, 1499, 2153
BstNI CCWGG 5 cut(s) 220, 507, 588, 747, 1229
BstNSI RCATGY 3 cut(s) 1013, 1279, 2156
BstPAI GACNNNNGTC 2 cut(s) 86, 855
BstPI GGTNACC 1 cut(s) 1077
BstSCI CCNGG 5 cut(s) 218, 505, 586, 745, 1227
BstSFI CTRYAG 2 cut(s) 771, 853
BstUI CGCG 3 cut(s) 44, 49, 174
BstV1I GCAGC 7 cut(s) 632, 785, 788, 1117, 1120, 1797, 2035
BstV2I GAAGAC 1 cut(s) 1644
BstX2I RGATCY 1 cut(s) 439
BstXI CCANNNNNNTGG 1 cut(s) 2019
BstYI RGATCY 1 cut(s) 439
Bsu36I CCTNAGG 1 cut(s) 1737
BsuI GTATCC 1 cut(s) 1201
BsuRI GGCC 5 cut(s) 163, 288, 580, 1001, 2147
BtgI CCRYGG 2 cut(s) 42, 1727
BtsCI GGATG 8 cut(s) 581, 1224, 1462, 1532, 1792, 1864, 1950, 1990
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 5 cut(s) 327, 684, 1434, 1836, 1893
Cac8I GCNNGC 4 cut(s) 187, 743, 1327, 2154
CfoI GCGC 2 cut(s) 49, 1968
Cfr13I GGNCC 6 cut(s) 81, 287, 578, 590, 689, 1064
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 3 cut(s) 28, 38, 2106
Csp6I GTAC 9 cut(s) 70, 325, 349, 391, 510, 698, 1363, 1898, 2030
CviQI GTAC 9 cut(s) 70, 325, 349, 391, 510, 698, 1363, 1898, 2030
DdeI CTNAG 7 cut(s) 149, 564, 630, 1044, 1301, 1446, 1737
DpnI GATC 9 cut(s) 77, 242, 441, 490, 1032, 1286, 1927, 2088, 2169
DpnII GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 1061
EaeI YGGCCR 1 cut(s) 2145
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 3 cut(s) 1002, 1105, 1358
Eco147I AGGCCT 1 cut(s) 1001
Eco47I GGWCC 4 cut(s) 81, 590, 689, 1064
Eco57I CTGAAG 1 cut(s) 753
Eco81I CCTNAGG 1 cut(s) 1737
Eco88I CYCGRG 1 cut(s) 2061
Eco91I GGTNACC 1 cut(s) 1077
EcoO109I RGGNCCY 1 cut(s) 81
EcoO65I GGTNACC 1 cut(s) 1077
EcoRII CCWGG 5 cut(s) 218, 505, 586, 745, 1227
EcoT14I CCWWGG 3 cut(s) 1002, 1105, 1358
EcoT22I ATGCAT 2 cut(s) 1534, 1662
ErhI CCWWGG 3 cut(s) 1002, 1105, 1358
Esp3I CGTCTC 2 cut(s) 1379, 1395
FaqI GGGAC 1 cut(s) 94
FauI CCCGC 3 cut(s) 32, 1446, 2045
FauNDI CATATG 3 cut(s) 1528, 1717, 1975
FbaI TGATCA 2 cut(s) 1284, 2086
FblI GTMKAC 2 cut(s) 17, 664
Fnu4HI GCNGC 8 cut(s) 45, 621, 774, 777, 1131, 1134, 1811, 2024
FokI GGATG 8 cut(s) 568, 1211, 1469, 1519, 1779, 1871, 1957, 1977
Fsp4HI GCNGC 8 cut(s) 45, 621, 774, 777, 1131, 1134, 1811, 2024
FspBI CTAG 4 cut(s) 401, 1481, 1586, 2027
GlaI GCGC 2 cut(s) 48, 1967
GluI GCNGC 8 cut(s) 45, 621, 774, 777, 1131, 1134, 1811, 2024
GsaI CCCAGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 1199
HaeIII GGCC 5 cut(s) 163, 288, 580, 1001, 2147
HgaI GACGC 3 cut(s) 28, 38, 2106
HhaI GCGC 2 cut(s) 49, 1968
Hin1I GRCGYC 3 cut(s) 20, 1388, 2117
Hin6I GCGC 2 cut(s) 47, 1966
HinP1I GCGC 2 cut(s) 47, 1966
HincII GTYRAC 2 cut(s) 18, 561
HindII GTYRAC 2 cut(s) 18, 561
HindIII AAGCTT 2 cut(s) 183, 233
HinfI GANTC 6 cut(s) 98, 1310, 1732, 1789, 1987, 2046
HphI GGTGA 3 cut(s) 836, 1948, 1949
Hpy166II GTNNAC 8 cut(s) 18, 260, 325, 561, 604, 665, 1513, 1956
Hpy188I TCNGA 9 cut(s) 118, 240, 733, 982, 1123, 1572, 1608, 2098, 2122
Hpy8I GTNNAC 8 cut(s) 18, 260, 325, 561, 604, 665, 1513, 1956
Hpy99I CGWCG 4 cut(s) 19, 22, 92, 98
HpyAV CCTTC 9 cut(s) 94, 300, 301, 530, 702, 728, 821, 1934, 2103
HpyCH4III ACNGT 4 cut(s) 1354, 1429, 1517, 1831
HpyCH4IV ACGT 4 cut(s) 1372, 1388, 1415, 1798
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 133, 191, 317, 1219, 1490, 1499, 2153
HpyF3I CTNAG 7 cut(s) 149, 564, 630, 1044, 1301, 1446, 1737
HpySE526I ACGT 4 cut(s) 1372, 1388, 1415, 1798
Hsp92I GRCGYC 3 cut(s) 20, 1388, 2117
HspAI GCGC 2 cut(s) 47, 1966
KpnI GGTACC 1 cut(s) 701
Ksp22I TGATCA 2 cut(s) 1284, 2086
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
LmnI GCTCC 3 cut(s) 5, 44, 1252
Lsp1109I GCAGC 7 cut(s) 632, 785, 788, 1117, 1120, 1797, 2035
LweI GCATC 8 cut(s) 232, 607, 722, 1209, 1234, 1541, 1647, 1849
MaeI CTAG 4 cut(s) 401, 1481, 1586, 2027
MaeII ACGT 4 cut(s) 1372, 1388, 1415, 1798
MaeIII GTNAC 1 cut(s) 1077
MalI GATC 9 cut(s) 77, 242, 441, 490, 1032, 1286, 1927, 2088, 2169
MbiI CCGCTC 1 cut(s) 8
MboI GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
MboII GAAGA 4 cut(s) 395, 608, 1649, 1960
MfeI CAATTG 1 cut(s) 2082
MflI RGATCY 1 cut(s) 439
MlsI TGGCCA 1 cut(s) 2147
MluNI TGGCCA 1 cut(s) 2147
MlyI GAGTC 2 cut(s) 107, 1996
MmeI TCCRAC 1 cut(s) 2145
Mox20I TGGCCA 1 cut(s) 2147
Mph1103I ATGCAT 2 cut(s) 1534, 1662
MroXI GAANNNNTTC 2 cut(s) 1773, 1952
MscI TGGCCA 1 cut(s) 2147
MseI TTAA 7 cut(s) 315, 344, 537, 1320, 1403, 1700, 1917
MslI CAYNNNNRTG 3 cut(s) 894, 2017, 2133
Msp20I TGGCCA 1 cut(s) 2147
MspA1I CMGCKG 4 cut(s) 27, 44, 55, 2040
MspR9I CCNGG 5 cut(s) 220, 507, 588, 747, 1229
MunI CAATTG 1 cut(s) 2082
Mva1269I GAATGC 1 cut(s) 1329
MvaI CCWGG 5 cut(s) 220, 507, 588, 747, 1229
MvnI CGCG 3 cut(s) 44, 49, 174
MwoI GCNNNNNNNGC 8 cut(s) 19, 133, 191, 317, 1219, 1490, 1499, 2153
NdeI CATATG 3 cut(s) 1528, 1717, 1975
NdeII GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
NlaIV GGNNCC 4 cut(s) 12, 82, 699, 1503
NsiI ATGCAT 2 cut(s) 1534, 1662
NspI RCATGY 3 cut(s) 1013, 1279, 2156
OliI CACNNNNGTG 1 cut(s) 894
PaeI GCATGC 1 cut(s) 2156
PaeR7I CTCGAG 1 cut(s) 2061
PceI AGGCCT 1 cut(s) 1001
PciI ACATGT 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 93
PctI GAATGC 1 cut(s) 1329
PdmI GAANNNNTTC 2 cut(s) 1773, 1952
PfeI GAWTC 4 cut(s) 1310, 1732, 1789, 2046
PflMI CCANNNNNTGG 1 cut(s) 1543
PfoI TCCNGGA 1 cut(s) 1227
PkrI GCNGC 8 cut(s) 46, 622, 775, 778, 1132, 1135, 1812, 2025
PleI GAGTC 2 cut(s) 106, 1995
PpsI GAGTC 2 cut(s) 106, 1995
PpuMI RGGWCCY 1 cut(s) 81
PscI ACATGT 1 cut(s) 1275
PshAI GACNNNNGTC 2 cut(s) 86, 855
PshBI ATTAAT 2 cut(s) 1403, 1917
Psp5II RGGWCCY 1 cut(s) 81
Psp6I CCWGG 5 cut(s) 218, 505, 586, 745, 1227
PspEI GGTNACC 1 cut(s) 1077
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 5 cut(s) 218, 505, 586, 745, 1227
PspN4I GGNNCC 4 cut(s) 12, 82, 699, 1503
PspPI GGNCC 6 cut(s) 81, 287, 578, 590, 689, 1064
PspPPI RGGWCCY 1 cut(s) 81
PspXI VCTCGAGB 1 cut(s) 2061
PstI CTGCAG 2 cut(s) 775, 857
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 9 cut(s) 71, 326, 350, 392, 511, 699, 1364, 1899, 2031
RsaNI GTAC 9 cut(s) 70, 325, 349, 391, 510, 698, 1363, 1898, 2030
RseI CAYNNNNRTG 3 cut(s) 894, 2017, 2133
SacII CCGCGG 1 cut(s) 45
SalI GTCGAC 1 cut(s) 16
SaqAI TTAA 7 cut(s) 315, 344, 537, 1320, 1403, 1700, 1917
SatI GCNGC 8 cut(s) 45, 621, 774, 777, 1131, 1134, 1811, 2024
Sau3AI GATC 9 cut(s) 75, 240, 439, 488, 1030, 1284, 1925, 2086, 2167
Sau96I GGNCC 6 cut(s) 81, 287, 578, 590, 689, 1064
ScaI AGTACT 2 cut(s) 1899, 2031
SchI GAGTC 2 cut(s) 107, 1996
ScrFI CCNGG 5 cut(s) 220, 507, 588, 747, 1229
SfaNI GCATC 8 cut(s) 232, 607, 722, 1209, 1234, 1541, 1647, 1849
SfcI CTRYAG 2 cut(s) 771, 853
Sfr274I CTCGAG 1 cut(s) 2061
Sfr303I CCGCGG 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 45
SgrDI CGTCGACG 1 cut(s) 16
SinI GGWCC 4 cut(s) 81, 590, 689, 1064
SlaI CTCGAG 1 cut(s) 2061
SmiMI CAYNNNNRTG 3 cut(s) 894, 2017, 2133
SmlI CTYRAG 3 cut(s) 832, 1678, 2061
SmoI CTYRAG 3 cut(s) 832, 1678, 2061
SphI GCATGC 1 cut(s) 2156
SseBI AGGCCT 1 cut(s) 1001
SsiI CCGC 9 cut(s) 8, 25, 42, 44, 53, 65, 172, 1453, 2038
SspI AATATT 1 cut(s) 1698
SspMI CTAG 4 cut(s) 401, 1481, 1586, 2027
StuI AGGCCT 1 cut(s) 1001
StyD4I CCNGG 5 cut(s) 218, 505, 586, 745, 1227
StyI CCWWGG 3 cut(s) 1002, 1105, 1358
TaaI ACNGT 4 cut(s) 1354, 1429, 1517, 1831
TaiI ACGT 4 cut(s) 1375, 1391, 1418, 1801
TaqI TCGA 4 cut(s) 17, 138, 1098, 2062
TatI WGTACW 4 cut(s) 324, 390, 1897, 2029
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 4 cut(s) 1310, 1732, 1789, 2046
Tru1I TTAA 7 cut(s) 315, 344, 537, 1320, 1403, 1700, 1917
Tru9I TTAA 7 cut(s) 315, 344, 537, 1320, 1403, 1700, 1917
TscAI CASTG 5 cut(s) 327, 691, 1434, 1836, 1893
TseI GCWGC 7 cut(s) 620, 773, 776, 1130, 1133, 1810, 2023
TspDTI ATGAA 8 cut(s) 420, 512, 532, 1302, 1389, 1961, 1992, 2124
TspGWI ACGGA 2 cut(s) 1667, 1744
TspRI CASTG 5 cut(s) 327, 691, 1434, 1836, 1893
Van91I CCANNNNNTGG 1 cut(s) 1543
VpaK11BI GGWCC 4 cut(s) 81, 590, 689, 1064
VspI ATTAAT 2 cut(s) 1403, 1917
XapI RAATTY 4 cut(s) 781, 949, 1025, 2071
XbaI TCTAGA 1 cut(s) 400
XceI RCATGY 3 cut(s) 1013, 1279, 2156
XcmI CCANNNNNNNNNTGG 1 cut(s) 1391
XhoI CTCGAG 1 cut(s) 2061
XmiI GTMKAC 2 cut(s) 17, 664
XmnI GAANNNNTTC 2 cut(s) 1773, 1952
XspI CTAG 4 cut(s) 401, 1481, 1586, 2027
ZraI GACGTC 1 cut(s) 1389
ZrmI AGTACT 2 cut(s) 1899, 2031
Zsp2I ATGCAT 2 cut(s) 1534, 1662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.