AT3G16970

Encoded by

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
5793668 .. 5794090
423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16970.1

Sequence Viewer

Length: 423 bp
ATGTGTGTTAGTGTAACAATATCTCGAGGCCAAAAGGATAGCATCCCTCCAACTCCAACATCCGGTTTCGACAACCCAAGAACAACAGTGGTGATATACAATGATCTTGGGGGTCATCTGCCATTGAGATACCATTGTAAATCAAAAAATGATGATCTTGGAGACCGGAATATGGCGGTAAATGGAACTTGGTCATTTGAATTTAGACCGAGTGTTTTTGGAGGAACTTTGTTTTTTTGCGGTTTTATATGGGATAAGGAGTTGCATTGGTTCGATATCTACAAACAGAGTAGAGACAGAGAATTCGCCGAGTTTGGATGTAGAAGATGCGAATGGAAGATACGCAAAGATGGACCTTGCAAATTGAACAAGAACAGTAATATGTTTGATGTTTGTCTTCCTTGGAATTCTCAATCGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.23

Weight (kDa)

8.5

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 135 6.8e-29 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 176, 240
AcsI RAATTY 3 cut(s) 200, 302, 406
AfiI CCNNNNNNNGG 2 cut(s) 62, 172
AgsI TTSAA 2 cut(s) 200, 367
Alw26I GTCTC 2 cut(s) 156, 288
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 1 cut(s) 28
ApoI RAATTY 3 cut(s) 200, 302, 406
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 1 cut(s) 353
BaeI ACNNNNGTAYC 2 cut(s) 121, 154
BbsI GAAGAC 1 cut(s) 389
BccI CCATC 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 156, 288
Bme18I GGWCC 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 353
BmsI GCATC 2 cut(s) 51, 317
BpiI GAAGAC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 2 cut(s) 62, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 172
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 3 cut(s) 42, 59, 323
BseLI CCNNNNNNNGG 2 cut(s) 62, 172
BshFI GGCC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 2 cut(s) 63, 166
BslI CCNNNNNNNGG 2 cut(s) 62, 172
BsmAI GTCTC 2 cut(s) 156, 288
BsnI GGCC 1 cut(s) 30
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 2 cut(s) 103, 154
BspACI CCGC 2 cut(s) 176, 240
BspANI GGCC 1 cut(s) 30
BspTNI GGTCTC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 2 cut(s) 103, 154
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 88, 377
BstF5I GGATG 3 cut(s) 42, 59, 323
BstKTI GATC 2 cut(s) 106, 157
BstMAI GTCTC 2 cut(s) 156, 288
BstMBI GATC 2 cut(s) 103, 154
BstV2I GAAGAC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 3 cut(s) 42, 59, 323
BtsIMutI CAGTG 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 353
CviJI RGCY 1 cut(s) 30
CviKI_1 RGCY 1 cut(s) 30
DpnI GATC 2 cut(s) 105, 156
DpnII GATC 2 cut(s) 103, 154
Eco130I CCWWGG 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 24
EcoRI GAATTC 2 cut(s) 302, 406
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaiI YATR 5 cut(s) 97, 173, 248, 250, 383
FokI GGATG 3 cut(s) 29, 46, 330
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 63, 166
HpaII CCGG 2 cut(s) 63, 166
HphI GGTGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 24
HpyCH4III ACNGT 2 cut(s) 88, 377
HpyCH4V TGCA 2 cut(s) 265, 360
Kzo9I GATC 2 cut(s) 103, 154
LpnPI CCDG 2 cut(s) 76, 179
LweI GCATC 2 cut(s) 51, 317
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 105, 156
MboI GATC 2 cut(s) 103, 154
MboII GAAGA 3 cut(s) 336, 349, 389
MluCI AATT 4 cut(s) 200, 302, 362, 406
MmeI TCCRAC 2 cut(s) 74, 80
MnlI CCTC 3 cut(s) 20, 57, 215
MseI TTAA 1 cut(s) 421
MspI CCGG 2 cut(s) 63, 166
NdeII GATC 2 cut(s) 103, 154
NmeAIII GCCGAG 1 cut(s) 334
PaeR7I CTCGAG 1 cut(s) 24
PspPI GGNCC 1 cut(s) 353
SaqAI TTAA 1 cut(s) 421
Sau3AI GATC 2 cut(s) 103, 154
Sau96I GGNCC 1 cut(s) 353
SetI ASST 1 cut(s) 358
SfaNI GCATC 2 cut(s) 51, 317
Sfr274I CTCGAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 4 cut(s) 200, 302, 362, 406
SsiI CCGC 2 cut(s) 176, 240
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 88, 377
TaqI TCGA 3 cut(s) 25, 69, 273
TaqII GACCGA 1 cut(s) 223
TasI AATT 4 cut(s) 200, 302, 362, 406
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TscAI CASTG 1 cut(s) 93
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 3 cut(s) 200, 302, 406
XhoI CTCGAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.