RchiOBHm_Chr5g0071851

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000577
Physical Location & Seq
Forward (+)
77686670 .. 77687098
429 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34686

Sequence Viewer

Length: 429 bp
ATGAGCTTGTTTGCAAGAAATGATATACTGTCAATCTTGCTTACCCTGTTCCTAACTATTTGTGATGCTGCTACTAATGCAAAAATGCATGTTAACATCACTAGTGATCTATCTGGTGGAGCTCCCATCGATCTCAACATTCATTGTAAAACACAGAAGCACGATTTTGGTGGTCTAGTGATTCCCTATGGATCATACTTTGACTTTGTTTTTTCACTAAGCATACTTCGGAGGAATACCATATTGGAGTGTGATGCCGAATGCGATGGTGTAGTTCACAACTTGGTTGCATACAACCAAAGGAGTTCAATCATAGACATCGTCTGTAAATATGGAATTTGTTTGTGGAAGATAAGGCGGGATGGATATTGTTATTTTAACAACGTACGAAGGGAGTATGATTGCACACCGTGGCATGGGCGGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.19

Weight (kDa)

6.93

Isoelectric Point (pI)

66.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 138 2.3e-13 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 358, 421
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 411
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 1 cut(s) 309
AhlI ACTAGT 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 2 cut(s) 6, 122
AluI AGCT 2 cut(s) 6, 122
Alw21I GWGCWC 1 cut(s) 124
AlwI GGATC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 336
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 55
BccI CCATC 3 cut(s) 134, 260, 356
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 102, 176
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmsI GCATC 2 cut(s) 55, 244
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 124
BsiWI CGTACG 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 416
BsmI GAATGC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 106, 130, 191
BspACI CCGC 2 cut(s) 358, 421
BspDI ATCGAT 1 cut(s) 129
BspPI GGATC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 3 cut(s) 106, 130, 191
Bst4CI ACNGT 2 cut(s) 30, 411
BstDEI CTNAG 1 cut(s) 218
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 3 cut(s) 109, 133, 194
BstMBI GATC 3 cut(s) 106, 130, 191
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 367
ClaI ATCGAT 1 cut(s) 129
Csp6I GTAC 1 cut(s) 386
CviAII CATG 2 cut(s) 89, 416
CviJI RGCY 2 cut(s) 6, 122
CviKI_1 RGCY 2 cut(s) 6, 122
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 218
DpnI GATC 3 cut(s) 108, 132, 193
DpnII GATC 3 cut(s) 106, 130, 191
DraIII CACNNNGTG 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoT22I ATGCAT 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 92, 419
FatI CATG 2 cut(s) 88, 415
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 102, 176
GluI GCNGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 92, 419
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 181
HpaI GTTAAC 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 94, 277
Hpy188I TCNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 94, 277
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 2 cut(s) 30, 411
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 5 cut(s) 14, 80, 88, 290, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 2 cut(s) 92, 419
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 106, 130, 191
LmnI GCTCC 2 cut(s) 119, 127
LpnPI CCDG 2 cut(s) 59, 99
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 55, 244
MaeI CTAG 2 cut(s) 102, 176
MaeII ACGT 1 cut(s) 384
MalI GATC 3 cut(s) 108, 132, 193
MboI GATC 3 cut(s) 106, 130, 191
MboII GAAGA 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 1 cut(s) 336
MnlI CCTC 1 cut(s) 225
Mph1103I ATGCAT 1 cut(s) 90
MseI TTAA 2 cut(s) 93, 378
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 3 cut(s) 106, 130, 191
NlaIII CATG 2 cut(s) 92, 419
NsiI ATGCAT 1 cut(s) 90
NspI RCATGY 1 cut(s) 92
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 181
Pfl23II CGTACG 1 cut(s) 385
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 124
PspLI CGTACG 1 cut(s) 385
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 93, 378
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 106, 130, 191
SduI GDGCHC 1 cut(s) 124
SetI ASST 3 cut(s) 8, 124, 387
SfaNI GCATC 2 cut(s) 55, 244
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 1 cut(s) 336
SsiI CCGC 2 cut(s) 358, 421
SspMI CTAG 2 cut(s) 102, 176
SstI GAGCTC 1 cut(s) 124
TaaI ACNGT 2 cut(s) 30, 411
TaiI ACGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 336
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 93, 378
Tru9I TTAA 2 cut(s) 93, 378
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 131
Tth111I GACNNNGTC 1 cut(s) 320
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 92
XspI CTAG 2 cut(s) 102, 176
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.