RLG00000009249

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000577
Physical Location & Seq
Forward (+)
49748365 .. 49748778
414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009249

Sequence Viewer

Length: 414 bp
ATGGCTTCATTCATGAAAAAGGTCGTTCTGCTGACGCTGCTTTTTCTGTTGTCAATGACAATGTCTAGTGATGGACTTGATCTCGGACGCAAGAGAAGACATATCACCATCTCAAATGGTTTGGACGGGAATACGGCTCTTACTGTTCACTGCAAATCCGGGGATGATGATATTGGTGCGAAAACCGTCCCCACTTCTGGAGTCTATGAATTCAGTTTTAAACCCAGAGTCTTACCAAAAACTACACTGTTCTTCTGTAGTTTTCGGTGGGAAGGTAATTTTCACTACTACGACGTGTATTTTGAGGGAATCGATTGTAGTGAGTGTATGTATTCGGTAAGGGGCCGGGGATCCAGCATATGCAGGTATAACTGGGACACACAGAAAGATGATTGCTTTGCTTGGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

15.66

Weight (kDa)

6.81

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 135 2.2e-20 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AclWI GGATC 2 cut(s) 345, 358
AcsI RAATTY 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 294
AjiI CACGTC 1 cut(s) 295
AlwI GGATC 2 cut(s) 345, 358
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 2 cut(s) 160, 347
AsuHPI GGTGA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 65, 116
BceAI ACGGC 1 cut(s) 150
BcnI CCSGG 2 cut(s) 160, 347
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 256
BfuAI ACCTGC 1 cut(s) 354
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 160, 347
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 2 cut(s) 344, 352
BmrFI CCNGG 2 cut(s) 160, 347
BmrI ACTGGG 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 160, 347
Bsa29I ATCGAT 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 159, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 159, 346
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 345
BshVI ATCGAT 1 cut(s) 312
BsiSI CCGG 2 cut(s) 159, 346
BslFI GGGAC 2 cut(s) 173, 389
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 173, 389
BsnI GGCC 1 cut(s) 345
Bsp143I GATC 2 cut(s) 79, 350
BspANI GGCC 1 cut(s) 345
BspDI ATCGAT 1 cut(s) 312
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 344, 352
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 2 cut(s) 345, 358
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 159, 346
BssMI GATC 2 cut(s) 79, 350
Bst4CI ACNGT 3 cut(s) 145, 187, 249
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 82, 353
BstMBI GATC 2 cut(s) 79, 350
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 158, 345
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 312
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 245
BveI ACCTGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 343
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 2 cut(s) 43, 96
CviAII CATG 1 cut(s) 13
CviJI RGCY 3 cut(s) 5, 137, 345
CviKI_1 RGCY 3 cut(s) 5, 137, 345
DpnI GATC 2 cut(s) 81, 352
DpnII GATC 2 cut(s) 79, 350
DraI TTTAAA 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 1 cut(s) 16
FaiI YATR 7 cut(s) 14, 102, 207, 329, 359, 361, 369
FaqI GGGAC 2 cut(s) 173, 389
FatI CATG 1 cut(s) 12
FauNDI CATATG 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 1 cut(s) 345
HapII CCGG 2 cut(s) 159, 346
HgaI GACGC 2 cut(s) 43, 96
Hin1II CATG 1 cut(s) 16
HinfI GANTC 3 cut(s) 201, 228, 309
HpaII CCGG 2 cut(s) 159, 346
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 13, 198
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 3 cut(s) 145, 187, 249
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 153, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 2 cut(s) 79, 350
LpnPI CCDG 7 cut(s) 172, 183, 238, 349, 358, 359, 367
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 294
MalI GATC 2 cut(s) 81, 352
MboI GATC 2 cut(s) 79, 350
MboII GAAGA 2 cut(s) 108, 244
MflI RGATCY 1 cut(s) 350
MluCI AATT 2 cut(s) 209, 277
MlyI GAGTC 2 cut(s) 210, 237
MnlI CCTC 1 cut(s) 298
MseI TTAA 1 cut(s) 219
MspI CCGG 2 cut(s) 159, 346
MspR9I CCNGG 2 cut(s) 160, 347
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 2 cut(s) 160, 347
NdeI CATATG 1 cut(s) 359
NdeII GATC 2 cut(s) 79, 350
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 344, 352
PagI TCATGA 1 cut(s) 12
PfeI GAWTC 1 cut(s) 309
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 2 cut(s) 209, 236
PpsI GAGTC 2 cut(s) 209, 236
PspN4I GGNNCC 2 cut(s) 344, 352
PspPI GGNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 79, 350
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 2 cut(s) 210, 237
ScrFI CCNGG 2 cut(s) 160, 347
SetI ASST 4 cut(s) 24, 277, 297, 368
SfcI CTRYAG 1 cut(s) 256
Sse9I AATT 2 cut(s) 209, 277
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 158, 345
TaaI ACNGT 3 cut(s) 145, 187, 249
TaiI ACGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 209, 277
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 2 cut(s) 155, 252
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 29, 222
TspRI CASTG 2 cut(s) 155, 252
Tth111I GACNNNGTC 1 cut(s) 61
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.