Rh6AG162000

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000577
Physical Location & Seq
Reverse (-)
25233015 .. 25237572
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG162000.1

Sequence Viewer

Length: 270 bp
ATGGCTTTGTTTATTGGAAAGGTAGTGCTACTCATGCAAGTTCTATCATTGACAGTAATGACAATTTCTGGTGAAGATATTGGACGCAAGACAAGGCATATCAAAATCTTAAATGATTTGGATGGAAACTTTCCCCTGACTGTTCAGTGTAAATCTGCTGATGATGATATTGGTGAGAAAACCCTCCGCCATGGTGCTGTATATGAGTTCAATTTTCAACCTAAGCATTCTCTCCTCATTGAGGACAATCCACACTTTTCACGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

89

Amino Acids

10.08

Weight (kDa)

6.49

Isoelectric Point (pI)

23.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 33 - 75 1.7e-08 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 2 cut(s) 211, 218
AjiI CACGTC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 83, 185
BccI CCATC 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 241
BsmI GAATGC 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 55, 142
BstDEI CTNAG 1 cut(s) 222
BstDSI CCRYGG 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 190
BtrI CACGTC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 152
CseI GACGC 1 cut(s) 93
CviAII CATG 2 cut(s) 34, 191
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DdeI CTNAG 1 cut(s) 222
EciI GGCGGA 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 190
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 37, 194
FaiI YATR 5 cut(s) 35, 99, 192, 202, 204
FatI CATG 2 cut(s) 33, 190
FokI GGATG 1 cut(s) 134
HgaI GACGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 37, 194
HphI GGTGA 2 cut(s) 83, 185
HpyCH4III ACNGT 2 cut(s) 55, 142
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 2 cut(s) 37, 194
LpnPI CCDG 2 cut(s) 54, 149
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 263
MboII GAAGA 1 cut(s) 86
MluCI AATT 2 cut(s) 63, 211
MnlI CCTC 3 cut(s) 194, 235, 245
MseI TTAA 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 1 cut(s) 190
NlaIII CATG 2 cut(s) 37, 194
NmuCI GTSAC 1 cut(s) 263
PctI GAATGC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 110
SetI ASST 3 cut(s) 24, 223, 265
SgeI CNNG 7 cut(s) 46, 50, 81, 100, 105, 148, 203
Sse9I AATT 2 cut(s) 63, 211
SsiI CCGC 1 cut(s) 187
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 55, 142
TaiI ACGT 1 cut(s) 265
TasI AATT 2 cut(s) 63, 211
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspRI CASTG 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.