FvH4_4g05620

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000577
Physical Location & Seq
Reverse (-)
4888891 .. 4890501
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05620.t1

Sequence Viewer

Length: 702 bp
ATGGCTTCGTTTGCAAGAAATGTACAACTGCTAAGCCTGCTGCTTGCATTAATTTTCCTCACAACTTGTGATGCTAATTCTGCAAGTGTTCACGTTCTGATCACCAACGAAATATCAGAGTATCATGGGAGACCTAACGTGACAATCACCCTTCATTGTAGATCAAGGGACGGTGATCTTGGTTTGTATCAGGTCCCCTATCTTTCGAACTATGAATTTAGTTTTAAACCAAGCATCTGGGGAAGATCACGATACGAGTGCAGCGTGAAGTGGGACGGCGAGTGTCACCGTTTCGTCGCATACAATCAGAAGAAGGACAAAGACAAGTGCAGAGTCTGTTTATGGAAAATAAAACCAGAAGCTGCATCTAGCTTTTTCGGCAGAGTACATGTTAAAATCTCTAATGAGCTGGGTCAAGGATTGGTGCTGAACCTTCATTGCTATTCAAGTGATGATGATCTCGGAACACATGCCCTCCCCATTCATGGCTCGATTCAATTTAGTTTCCGGCCAAGTGTTTTTAAGACTACCATTTTTACATGCAGTTTTGGATGGAATGGTGGATATCATGTGGCGCAAATTTACAACCACGATAGGGATAGGTGTAGAAATTGTACGTGGAGTATAATACCATCAGGACCATGCCAGTACAACTTCGATCTCCATCAATCTTATTGTTATTTGTGGCCTAAAGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

234

Amino Acids

26.82

Weight (kDa)

8.57

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 121 6.2e-17 Plant self-incompatibility protein S1
Self-incomp_S1 PF05938 130 - 229 1.1e-24 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 2 cut(s) 215, 579
AfaI GTAC 4 cut(s) 24, 387, 616, 650
AfiI CCNNNNNNNGG 2 cut(s) 485, 595
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 2 cut(s) 447, 497
AluBI AGCT 3 cut(s) 362, 372, 409
AluI AGCT 3 cut(s) 362, 372, 409
Alw26I GTCTC 1 cut(s) 124
AlwNI CAGNNNCTG 2 cut(s) 336, 362
AoxI GGCC 2 cut(s) 509, 686
ApeKI GCWGC 3 cut(s) 40, 261, 362
ApoI RAATTY 2 cut(s) 215, 579
AseI ATTAAT 1 cut(s) 50
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 2 cut(s) 193, 638
AsuHPI GGTGA 4 cut(s) 94, 139, 185, 278
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 193, 638
BbvI GCAGC 3 cut(s) 27, 273, 349
BccI CCATC 3 cut(s) 546, 640, 672
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 369
BisI GCNGC 3 cut(s) 41, 262, 363
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 3 cut(s) 42, 263, 364
Bme18I GGWCC 2 cut(s) 193, 638
BmgT120I GGNCC 2 cut(s) 193, 638
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 3 cut(s) 61, 243, 374
Bpu1102I GCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 618
BsaBI GATNNNNATC 2 cut(s) 456, 663
BsaI GGTCTC 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 595
Bse1I ACTGG 1 cut(s) 646
Bse3DI GCAATG 1 cut(s) 436
Bse8I GATNNNNATC 2 cut(s) 456, 663
BseGI GGATG 1 cut(s) 557
BseJI GATNNNNATC 2 cut(s) 456, 663
BseLI CCNNNNNNNGG 2 cut(s) 485, 595
BseMI GCAATG 1 cut(s) 436
BseNI ACTGG 1 cut(s) 646
BseXI GCAGC 3 cut(s) 27, 273, 349
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 2 cut(s) 280, 349
BshFI GGCC 2 cut(s) 511, 688
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 3 cut(s) 179, 182, 287
BslI CCNNNNNNNGG 2 cut(s) 485, 595
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 3 cut(s) 179, 182, 287
BsnI GGCC 2 cut(s) 511, 688
Bso31I GGTCTC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 6 cut(s) 99, 161, 175, 245, 457, 658
Bsp1720I GCTNAGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 511, 688
BspLI GGNNCC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 646
BssMI GATC 6 cut(s) 99, 161, 175, 245, 457, 658
Bst4CI ACNGT 2 cut(s) 173, 290
BstAUI TGTACA 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 38, 45
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 557
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 6 cut(s) 102, 164, 178, 248, 460, 661
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 6 cut(s) 99, 161, 175, 245, 457, 658
BstMWI GCNNNNNNNGC 4 cut(s) 11, 37, 80, 378
BstNSI RCATGY 3 cut(s) 392, 473, 543
BstV1I GCAGC 3 cut(s) 27, 273, 349
BstXI CCANNNNNNTGG 1 cut(s) 237
BsuRI GGCC 2 cut(s) 511, 688
BtsCI GGATG 1 cut(s) 557
Cac8I GCNNGC 2 cut(s) 38, 45
CaiI CAGNNNCTG 2 cut(s) 336, 362
CfoI GCGC 1 cut(s) 577
Cfr13I GGNCC 2 cut(s) 193, 638
Csp6I GTAC 4 cut(s) 23, 386, 615, 649
CviAII CATG 7 cut(s) 125, 389, 470, 485, 540, 569, 642
CviJI RGCY 8 cut(s) 5, 36, 362, 372, 409, 489, 511, 688
CviKI_1 RGCY 8 cut(s) 5, 36, 362, 372, 409, 489, 511, 688
CviQI GTAC 4 cut(s) 23, 386, 615, 649
DdeI CTNAG 1 cut(s) 32
DpnI GATC 6 cut(s) 101, 163, 177, 247, 459, 660
DpnII GATC 6 cut(s) 99, 161, 175, 245, 457, 658
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 566
Eco47I GGWCC 2 cut(s) 193, 638
EcoO109I RGGNCCY 1 cut(s) 193
EcoRV GATATC 1 cut(s) 566
FaeI CATG 7 cut(s) 128, 392, 473, 488, 543, 572, 645
FaqI GGGAC 3 cut(s) 179, 182, 287
FatI CATG 7 cut(s) 124, 388, 469, 484, 539, 568, 641
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 41, 262, 363
FokI GGATG 1 cut(s) 564
Fsp4HI GCNGC 3 cut(s) 41, 262, 363
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 576
GluI GCNGC 3 cut(s) 41, 262, 363
GsaI CCCAGC 1 cut(s) 413
HaeIII GGCC 2 cut(s) 511, 688
HapII CCGG 1 cut(s) 508
HhaI GCGC 1 cut(s) 577
Hin1II CATG 7 cut(s) 128, 392, 473, 488, 543, 572, 645
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HinfI GANTC 2 cut(s) 333, 493
HpaII CCGG 1 cut(s) 508
HphI GGTGA 4 cut(s) 94, 139, 185, 278
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 99, 118, 309, 464
Hpy188III TCNNGA 2 cut(s) 249, 636
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 161, 307, 443
HpyCH4III ACNGT 2 cut(s) 173, 290
HpyCH4IV ACGT 3 cut(s) 93, 138, 617
HpyCH4V TGCA 7 cut(s) 14, 47, 83, 261, 330, 365, 543
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 37, 80, 378
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 3 cut(s) 93, 138, 617
Hsp92II CATG 7 cut(s) 128, 392, 473, 488, 543, 572, 645
HspAI GCGC 1 cut(s) 575
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 6 cut(s) 99, 161, 175, 245, 457, 658
LpnPI CCDG 8 cut(s) 50, 176, 223, 369, 395, 521, 621, 659
Lsp1109I GCAGC 3 cut(s) 27, 273, 349
LweI GCATC 3 cut(s) 61, 243, 374
MaeI CTAG 1 cut(s) 369
MaeII ACGT 3 cut(s) 93, 138, 617
MaeIII GTNAC 2 cut(s) 139, 284
MalI GATC 6 cut(s) 101, 163, 177, 247, 459, 660
MboI GATC 6 cut(s) 99, 161, 175, 245, 457, 658
MboII GAAGA 2 cut(s) 255, 322
MluCI AATT 6 cut(s) 51, 76, 215, 497, 579, 610
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 2 cut(s) 68, 485
MseI TTAA 4 cut(s) 50, 225, 393, 522
MspI CCGG 1 cut(s) 508
MwoI GCNNNNNNNGC 4 cut(s) 11, 37, 80, 378
NdeII GATC 6 cut(s) 99, 161, 175, 245, 457, 658
NlaIII CATG 7 cut(s) 128, 392, 473, 488, 543, 572, 645
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 2 cut(s) 139, 284
NspI RCATGY 3 cut(s) 392, 473, 543
NspV TTCGAA 1 cut(s) 206
PciI ACATGT 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 3 cut(s) 42, 263, 364
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 2 cut(s) 193, 638
PspPPI RGGWCCY 1 cut(s) 193
PstNI CAGNNNCTG 2 cut(s) 336, 362
RsaI GTAC 4 cut(s) 24, 387, 616, 650
RsaNI GTAC 4 cut(s) 23, 386, 615, 649
SaqAI TTAA 4 cut(s) 50, 225, 393, 522
SatI GCNGC 3 cut(s) 41, 262, 363
Sau3AI GATC 6 cut(s) 99, 161, 175, 245, 457, 658
Sau96I GGNCC 2 cut(s) 193, 638
SchI GAGTC 1 cut(s) 342
SfaNI GCATC 3 cut(s) 61, 243, 374
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 2 cut(s) 193, 638
Sse9I AATT 6 cut(s) 51, 76, 215, 497, 579, 610
SspMI CTAG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 173, 290
TaiI ACGT 3 cut(s) 96, 141, 620
TaqI TCGA 3 cut(s) 206, 491, 657
TasI AATT 6 cut(s) 51, 76, 215, 497, 579, 610
TatI WGTACW 3 cut(s) 22, 385, 648
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 4 cut(s) 50, 225, 393, 522
Tru9I TTAA 4 cut(s) 50, 225, 393, 522
TseFI GTSAC 2 cut(s) 139, 284
TseI GCWGC 3 cut(s) 40, 261, 362
Tsp45I GTSAC 2 cut(s) 139, 284
TspDTI ATGAA 4 cut(s) 143, 228, 425, 473
VpaK11BI GGWCC 2 cut(s) 193, 638
VspI ATTAAT 1 cut(s) 50
XapI RAATTY 2 cut(s) 215, 579
XceI RCATGY 3 cut(s) 392, 473, 543
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.