Rh4CG077800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000577
Physical Location & Seq
Reverse (-)
14070201 .. 14070542
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG077800.1

Sequence Viewer

Length: 342 bp
ATGTCCGAGTATCAGGGCAGACCTAACGTGACGATCACTCTTCATTGCAGATCGAGAGACGACGATCTTGGTGTCCATCAGATCCCCTATCTTGAGAAATATGAATTTAGTTTTCACCCAAGTGTTGTAAAAAATACGGTATTCGAGTGCGGTGTGAAGTGGGATGGTGACTGTCACAGTTTCGTTGCATACAACAAGAACAGAGACAGAGACAAGTGCAGAGTTTGTTTATGGAAAATAAAACCAGAAGCTGCATGTATGTATAACTACGGCAAAAAGACTTACGATTGCCCTGAGTGGGGGGACTGGTGTCAATCGTCTAAGGTGAAGTGTATTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

113

Amino Acids

13.27

Weight (kDa)

8.05

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 8 - 100 5.5e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 298, 299
AleI CACNNNNGTG 1 cut(s) 120
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw26I GTCTC 3 cut(s) 51, 198, 204
AlwI GGATC 1 cut(s) 76
AlwNI CAGNNNCTG 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 104
AsuHPI GGTGA 3 cut(s) 107, 179, 337
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 84, 158
BceAI ACGGC 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 51, 198, 204
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BoxI GACNNNNGTC 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 299
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 43
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 298, 299
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 298, 299
BsmAI GTCTC 3 cut(s) 51, 198, 204
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 317
Bsp143I GATC 4 cut(s) 33, 50, 64, 81
BspACI CCGC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 311
BssMI GATC 4 cut(s) 33, 50, 64, 81
Bst4CI ACNGT 3 cut(s) 139, 173, 179
Bst6I CTCTTC 1 cut(s) 45
BstDEI CTNAG 3 cut(s) 294, 321, 339
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 4 cut(s) 36, 53, 67, 84
BstMAI GTCTC 3 cut(s) 51, 198, 204
BstMBI GATC 4 cut(s) 33, 50, 64, 81
BstNSI RCATGY 1 cut(s) 258
BstPAI GACNNNNGTC 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BtsCI GGATG 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 251
CviAII CATG 1 cut(s) 255
CviJI RGCY 1 cut(s) 251
CviKI_1 RGCY 1 cut(s) 251
DdeI CTNAG 3 cut(s) 294, 321, 339
DpnI GATC 4 cut(s) 35, 52, 66, 83
DpnII GATC 4 cut(s) 33, 50, 64, 81
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 1 cut(s) 258
FaiI YATR 6 cut(s) 102, 190, 232, 256, 260, 264
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 258
HphI GGTGA 3 cut(s) 107, 179, 337
Hpy188I TCNGA 2 cut(s) 7, 81
Hpy188III TCNNGA 2 cut(s) 54, 92
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 139, 173, 179
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 48, 188, 219, 254
HpyF3I CTNAG 3 cut(s) 294, 321, 339
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 258
Kzo9I GATC 4 cut(s) 33, 50, 64, 81
LpnPI CCDG 3 cut(s) 258, 292, 306
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 28, 167, 173
MalI GATC 4 cut(s) 35, 52, 66, 83
MboI GATC 4 cut(s) 33, 50, 64, 81
MboII GAAGA 1 cut(s) 32
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 120
NdeII GATC 4 cut(s) 33, 50, 64, 81
NlaIII CATG 1 cut(s) 258
NmuCI GTSAC 3 cut(s) 28, 167, 173
NspI RCATGY 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 120
PkrI GCNGC 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 120
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 4 cut(s) 33, 50, 64, 81
SetI ASST 4 cut(s) 25, 30, 253, 327
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 150
TaaI ACNGT 3 cut(s) 139, 173, 179
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 53, 144
TasI AATT 1 cut(s) 104
TseFI GTSAC 3 cut(s) 28, 167, 173
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 3 cut(s) 28, 167, 173
TspDTI ATGAA 2 cut(s) 32, 117
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.