AT4G16195

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000577
Physical Location & Seq
Reverse (-)
9173165 .. 9173650
486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16195.1

Sequence Viewer

Length: 486 bp
ATGGATATTCCAAAGCAATATCTATCACTATTCATATTGATTATCTTCATAACTACAAAATTATCACAAGCCGACCATAAAAACGACATTCCAGTTCCCAACGATCCATCATCAACAAATTCTGTGTTTCCTACCTCGAAAAGAACCGTGGAAATCAATAATGATCTCGGTAATCAGCTAACGTTACTGTATCATTGTAAATCAAAAGACGATGATTTAGGTAACCGGACTCTGCAACCAGGTGAGTCGTGGTCTTTTAGTTTCGGGCGTCAATTCTTTGGAAGGACGTTGTATTTTTGTAGTTTTAGTTGGCCAAATGAATCGCATTCGTTCGATATATATAAAGACCATCGAGATAGCGGCGGTGATAACAAGTGCGAGAGCGACAGGTGTGTGTGGAAGATAAGAAGAAACGGACCTTGTAGGTTTAACGATGAAACGAAGCAGTTTGATCTTTGTTATCCTTGGAATAAATCTTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

161

Amino Acids

18.81

Weight (kDa)

6.88

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 49 - 156 6.3e-34 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 360, 363
AclI AACGTT 1 cut(s) 182
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 311
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
AlwI GGATC 1 cut(s) 98
AoxI GGCC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 254, 377
AvaII GGWCC 1 cut(s) 416
BalI TGGCCA 1 cut(s) 313
BccI CCATC 2 cut(s) 115, 357
BciT130I CCWGG 1 cut(s) 240
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 147, 464
BsaWI WCCGGW 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 2 cut(s) 147, 464
BseNI ACTGG 1 cut(s) 92
BshFI GGCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 226
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 103, 163, 451
BspACI CCGC 2 cut(s) 360, 363
BspANI GGCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 147, 464
BssMI GATC 3 cut(s) 103, 163, 451
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 464
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 2 cut(s) 148, 189
BstACI GRCGYC 1 cut(s) 268
BstDSI CCRYGG 1 cut(s) 147
BstEII GGTNACC 1 cut(s) 221
BstKTI GATC 3 cut(s) 106, 166, 454
BstMBI GATC 3 cut(s) 103, 163, 451
BstNI CCWGG 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 238
BsuRI GGCC 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 238
CviJI RGCY 3 cut(s) 71, 178, 313
CviKI_1 RGCY 3 cut(s) 71, 178, 313
DpnI GATC 3 cut(s) 105, 165, 453
DpnII GATC 3 cut(s) 103, 163, 451
EaeI YGGCCR 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 416
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 464
FaiI YATR 6 cut(s) 35, 50, 78, 338, 340, 342
Fnu4HI GCNGC 1 cut(s) 361
Fsp4HI GCNGC 1 cut(s) 361
GluI GCNGC 1 cut(s) 361
HaeIII GGCC 1 cut(s) 313
HapII CCGG 1 cut(s) 226
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 268
HinfI GANTC 3 cut(s) 229, 245, 320
HpaII CCGG 1 cut(s) 226
HphI GGTGA 2 cut(s) 254, 377
Hpy188III TCNNGA 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 2 cut(s) 148, 189
HpyCH4IV ACGT 2 cut(s) 182, 287
HpyCH4V TGCA 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 182, 287
Hsp92I GRCGYC 1 cut(s) 268
Kzo9I GATC 3 cut(s) 103, 163, 451
LpnPI CCDG 5 cut(s) 105, 225, 239, 252, 373
MabI ACCWGGT 1 cut(s) 238
MaeII ACGT 2 cut(s) 182, 287
MaeIII GTNAC 2 cut(s) 183, 221
MalI GATC 3 cut(s) 105, 165, 453
MboI GATC 3 cut(s) 103, 163, 451
MboII GAAGA 3 cut(s) 37, 412, 420
MlsI TGGCCA 1 cut(s) 313
MluCI AATT 3 cut(s) 59, 118, 272
MluNI TGGCCA 1 cut(s) 313
MlyI GAGTC 2 cut(s) 223, 254
MnlI CCTC 1 cut(s) 145
Mox20I TGGCCA 1 cut(s) 313
MscI TGGCCA 1 cut(s) 313
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 313
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 240
NdeII GATC 3 cut(s) 103, 163, 451
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 2 cut(s) 223, 253
PpsI GAGTC 2 cut(s) 223, 253
Psp1406I AACGTT 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 238
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 238
PspPI GGNCC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 3 cut(s) 103, 163, 451
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 2 cut(s) 223, 254
ScrFI CCNGG 1 cut(s) 240
SetI ASST 9 cut(s) 137, 180, 185, 223, 244, 290, 392, 421, 428
SexAI ACCWGGT 1 cut(s) 238
SinI GGWCC 1 cut(s) 416
Sse9I AATT 3 cut(s) 59, 118, 272
SsiI CCGC 2 cut(s) 360, 363
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 2 cut(s) 148, 189
TaiI ACGT 2 cut(s) 185, 290
TaqI TCGA 3 cut(s) 137, 333, 352
TasI AATT 3 cut(s) 59, 118, 272
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TspDTI ATGAA 4 cut(s) 22, 37, 333, 450
TspGWI ACGGA 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.