Rh4CG104100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000577
Physical Location & Seq
Reverse (-)
19269282 .. 19269695
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG104100.1

Sequence Viewer

Length: 414 bp
ATGGCTTCATTCATGAAAAAGGTGGTTCTGCTAACGCTGCTTTTTCTGTTGTCAATGACAATGTCTAGTGATGGACTTAGTCTCGGACGCAAGAGAAGACATATCACCATCTCAAATGGTTTGGACAAGGATCTTACTGTTCACTGCAAATCCGGGGATGATGATATTGGTGCGAAAACCCTCCCCATTTCTGGAGTCTATGAATTCAGTTTTAAACCCAGAGTCTTACCAAAAACTACACTGTACTTCTGTAGTTTTCAGTGGGAAGATCATTTTCACTACTACGACGTGTATTATGAGGGAATCGATTGTAGTGAGTGTATGTATTCGGTAAAGGCCCTTGGCCAGGTAGCCAGCATATGCTGGTATAACTGGGAAACACAGAAAGACGATTGCTTTCTTTTGAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

137

Amino Acids

15.8

Weight (kDa)

6.04

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 136 4.7e-19 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 191, 346
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 406
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 138
AoxI GGCC 2 cut(s) 336, 343
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 337
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 97
BalI TGGCCA 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 65, 116
BciT130I CCWGG 1 cut(s) 347
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 154, 347
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 337
BmrFI CCNGG 2 cut(s) 154, 347
BmrI ACTGGG 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 153, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 346
Bse1I ACTGG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 347
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 153, 340
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 191, 346
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 2 cut(s) 338, 345
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 191, 346
BsmAI GTCTC 1 cut(s) 86
BsnI GGCC 2 cut(s) 338, 345
Bsp143I GATC 2 cut(s) 130, 268
BspANI GGCC 2 cut(s) 338, 345
BspDI ATCGAT 1 cut(s) 306
BspHI TCATGA 1 cut(s) 12
BspPI GGATC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 153, 340
BssMI GATC 2 cut(s) 130, 268
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 2 cut(s) 139, 243
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 77
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 133, 271
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 2 cut(s) 130, 268
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 152, 345
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 2 cut(s) 338, 345
BsuTUI ATCGAT 1 cut(s) 306
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 3 cut(s) 142, 239, 266
Cac8I GCNNGC 1 cut(s) 355
CciI TCATGA 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 337
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 13
CviJI RGCY 4 cut(s) 5, 338, 345, 353
CviKI_1 RGCY 4 cut(s) 5, 338, 345, 353
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 77
DpnI GATC 2 cut(s) 132, 270
DpnII GATC 2 cut(s) 130, 268
DraI TTTAAA 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 14, 102, 201, 297, 323, 359, 361, 369
FatI CATG 1 cut(s) 12
FauNDI CATATG 1 cut(s) 359
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 338, 345
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 16
HinfI GANTC 3 cut(s) 195, 222, 303
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 13, 192
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 290
HpyCH4III ACNGT 2 cut(s) 139, 243
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 2 cut(s) 130, 268
LpnPI CCDG 8 cut(s) 166, 177, 232, 332, 349, 358, 359, 367
Lsp1109I GCAGC 1 cut(s) 24
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 288
MalI GATC 2 cut(s) 132, 270
MboI GATC 2 cut(s) 130, 268
MboII GAAGA 2 cut(s) 108, 278
MflI RGATCY 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 345
MluCI AATT 2 cut(s) 203, 409
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 2 cut(s) 204, 231
MnlI CCTC 2 cut(s) 191, 292
Mox20I TGGCCA 1 cut(s) 345
MscI TGGCCA 1 cut(s) 345
MseI TTAA 2 cut(s) 213, 412
Msp20I TGGCCA 1 cut(s) 345
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 154, 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 154
NdeI CATATG 1 cut(s) 359
NdeII GATC 2 cut(s) 130, 268
NlaIII CATG 1 cut(s) 16
PagI TCATGA 1 cut(s) 12
PfeI GAWTC 1 cut(s) 303
PflFI GACNNNGTC 2 cut(s) 61, 78
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 2 cut(s) 203, 230
PpsI GAGTC 2 cut(s) 203, 230
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspPI GGNCC 1 cut(s) 337
PsuI RGATCY 1 cut(s) 130
PsyI GACNNNGTC 2 cut(s) 61, 78
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SaqAI TTAA 2 cut(s) 213, 412
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 130, 268
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 2 cut(s) 204, 231
ScrFI CCNGG 2 cut(s) 154, 347
SetI ASST 3 cut(s) 24, 291, 351
SfcI CTRYAG 1 cut(s) 250
Sse9I AATT 2 cut(s) 203, 409
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 152, 345
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 139, 243
TaiI ACGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 203, 409
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 213, 412
Tru9I TTAA 2 cut(s) 213, 412
TscAI CASTG 3 cut(s) 149, 246, 266
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 29, 216
TspRI CASTG 3 cut(s) 149, 246, 266
Tth111I GACNNNGTC 2 cut(s) 61, 78
XagI CCTNNNNNAGG 1 cut(s) 344
XapI RAATTY 1 cut(s) 203
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.