MD04G1130600.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000577
Physical Location & Seq
Forward (+)
21714313 .. 21714747
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1130600.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGCGTCGTTCGCTGGAAACGTAATGTTGCTACCGTTGGCTTTGTTGTTCACATTAACCATTTGTGCATCTGGCCACTATTCCCTTTTTCCAACGATACATGTCCGAGTCATAAATAAATTGAGTAACAGCTTGACGCTTACTGTTCACTGCAAATCGGCAGATGATGATATCGGTGTCAAAGTGCTTGCCCCAGATGGCTTCTTTGAATTCAAATTTCGATCACATGTGGTGAAATCTACACAATTCTACTGTAGCTTTCAGTGGCCAGACGTTCTAAAGTGGTTTGATGTCTACACGCAAGAGAGAGACATGAACAAATGTACCAAGTGTTATTGGAGCATAACACAAGATAAACCATGCAGGTTAAATGAGAAATCTGGTTTGTATGACAATTGCTTTGAGTGGAACAAGCCTAAATATATCGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

145

Amino Acids

16.65

Weight (kDa)

8.45

Isoelectric Point (pI)

23.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 136 4e-29 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 294
AcoI YGGCCR 2 cut(s) 73, 266
AcsI RAATTY 2 cut(s) 209, 215
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 325
AflIII ACRYGT 2 cut(s) 100, 226
AgsI TTSAA 2 cut(s) 209, 214
AluBI AGCT 2 cut(s) 132, 258
AluI AGCT 2 cut(s) 132, 258
Alw26I GTCTC 1 cut(s) 303
AoxI GGCC 2 cut(s) 73, 266
ApoI RAATTY 2 cut(s) 209, 215
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AsuHPI GGTGA 1 cut(s) 244
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BalI TGGCCA 2 cut(s) 75, 268
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 354
BmsI GCATC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 5
BshFI GGCC 2 cut(s) 75, 268
BsmAI GTCTC 1 cut(s) 303
BsnI GGCC 2 cut(s) 75, 268
Bsp143I GATC 1 cut(s) 221
BspANI GGCC 2 cut(s) 75, 268
BspMI ACCTGC 1 cut(s) 354
BssMI GATC 1 cut(s) 221
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 36, 145, 254
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 2 cut(s) 104, 230
BstSFI CTRYAG 1 cut(s) 253
BsuRI GGCC 2 cut(s) 75, 268
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 269
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 189
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 324
CviAII CATG 4 cut(s) 101, 227, 313, 360
CviJI RGCY 7 cut(s) 41, 75, 132, 201, 258, 268, 415
CviKI_1 RGCY 7 cut(s) 41, 75, 132, 201, 258, 268, 415
CviQI GTAC 1 cut(s) 324
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
EaeI YGGCCR 2 cut(s) 73, 266
Eco32I GATATC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 209
EcoRV GATATC 1 cut(s) 172
FaeI CATG 4 cut(s) 104, 230, 316, 363
FaiI YATR 8 cut(s) 102, 113, 228, 314, 344, 361, 390, 423
FatI CATG 4 cut(s) 100, 226, 312, 359
FblI GTMKAC 1 cut(s) 294
HaeIII GGCC 2 cut(s) 75, 268
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 104, 230, 316, 363
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 3 cut(s) 51, 148, 295
Hpy188I TCNGA 1 cut(s) 107
Hpy8I GTNNAC 3 cut(s) 51, 148, 295
Hpy99I CGWCG 1 cut(s) 10
HpyCH4III ACNGT 3 cut(s) 36, 145, 254
HpyCH4IV ACGT 2 cut(s) 21, 273
HpyCH4V TGCA 3 cut(s) 68, 153, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 21, 273
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 104, 230, 316, 363
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 5 cut(s) 57, 207, 282, 349, 366
LweI GCATC 1 cut(s) 77
MaeII ACGT 2 cut(s) 21, 273
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MfeI CAATTG 1 cut(s) 394
MlsI TGGCCA 2 cut(s) 75, 268
MluCI AATT 5 cut(s) 119, 209, 215, 245, 394
MluNI TGGCCA 2 cut(s) 75, 268
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 116
Mox20I TGGCCA 2 cut(s) 75, 268
MscI TGGCCA 2 cut(s) 75, 268
MseI TTAA 3 cut(s) 56, 368, 433
Msp20I TGGCCA 2 cut(s) 75, 268
MunI CAATTG 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 221
NlaIII CATG 4 cut(s) 104, 230, 316, 363
NspI RCATGY 2 cut(s) 104, 230
PciI ACATGT 2 cut(s) 100, 226
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PscI ACATGT 2 cut(s) 100, 226
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 56, 368, 433
Sau3AI GATC 1 cut(s) 221
SchI GAGTC 1 cut(s) 117
SetI ASST 5 cut(s) 24, 134, 260, 276, 368
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 253
Sse9I AATT 5 cut(s) 119, 209, 215, 245, 394
TaaI ACNGT 3 cut(s) 36, 145, 254
TaiI ACGT 2 cut(s) 24, 276
TaqI TCGA 1 cut(s) 220
TasI AATT 5 cut(s) 119, 209, 215, 245, 394
Tru1I TTAA 3 cut(s) 56, 368, 433
Tru9I TTAA 3 cut(s) 56, 368, 433
TscAI CASTG 2 cut(s) 155, 269
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 2 cut(s) 155, 269
XapI RAATTY 2 cut(s) 209, 215
XceI RCATGY 2 cut(s) 104, 230
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.