FvH4_4g02160

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000577
Physical Location & Seq
Forward (+)
2010290 .. 2010607
318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02160.t1

Sequence Viewer

Length: 318 bp
ATGTTGCACATAGTACATTTCTACCAAGATAACACTTCAAAACAAATTAGCATGGGTTTCTTCATTGGAAGAGTAGTGATGATGATATTGCTTATGTTGTTCTTCGGAATTGCTTGTAATGCACACTGGACAAAACATATAAGAGTCACGAATCAATTAGAAGGCATGACACTCAACGTTCACGCCCAATCCGCTGACAATGATCTCGGTCTCCAAAAACTTGCCCCTAATGCTTTCTTCCAATTCAATTTTAAATCTAGTTTTATAGGGGACACTAAATTCTACTGCACTTTCGAGTGGCCTGATGCAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

106

Amino Acids

12.16

Weight (kDa)

6.96

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 46 - 102 3.9e-13 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclI AACGTT 1 cut(s) 177
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 2 cut(s) 39, 247
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 258
BmsI GCATC 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 131
BssMI GATC 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 64
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 119, 191, 230
BsuRI GGCC 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 124
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 52, 166
CviJI RGCY 1 cut(s) 301
CviKI_1 RGCY 1 cut(s) 301
CviQI GTAC 1 cut(s) 14
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 215
FaeI CATG 2 cut(s) 55, 169
FaiI YATR 7 cut(s) 11, 53, 95, 138, 140, 167, 266
FaqI GGGAC 1 cut(s) 284
FatI CATG 2 cut(s) 51, 165
FspBI CTAG 1 cut(s) 258
HaeIII GGCC 1 cut(s) 301
Hin1II CATG 2 cut(s) 55, 169
HinfI GANTC 2 cut(s) 144, 151
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 4 cut(s) 7, 122, 288, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 191, 230
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 55, 169
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 1 cut(s) 112
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 4 cut(s) 52, 81, 94, 229
MluCI AATT 6 cut(s) 45, 108, 155, 242, 247, 278
MlyI GAGTC 1 cut(s) 153
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 3 cut(s) 119, 191, 230
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 55, 169
NmuCI GTSAC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 151
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 177
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 252
Sau3AI GATC 1 cut(s) 202
SchI GAGTC 1 cut(s) 153
SetI ASST 1 cut(s) 180
SfaNI GCATC 1 cut(s) 295
Sse9I AATT 6 cut(s) 45, 108, 155, 242, 247, 278
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 258
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 294
TaqII GACCGA 1 cut(s) 197
TasI AATT 6 cut(s) 45, 108, 155, 242, 247, 278
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 131
XapI RAATTY 1 cut(s) 278
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.