RLG00000009505

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000577
Physical Location & Seq
Forward (+)
53747446 .. 53747868
423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009505

Sequence Viewer

Length: 423 bp
ATGGCTTCGTTTGCACGAAATGTACAACTCCTAAGCCTGCTGCTTGCAGTTTTCCTGACAACTTGTGATGCTAATGCGAGAGTACGCGTTATGATCACCAACGAAATATCGGAGTATCAGGGGAAACCTAACGTGACAATCACCCTTCACTGTAGATCTAGGGACGATGATCTTGGTTCCCATGAGGTCCCCTATCTTTCCGACTACGAATTTACTTTCAAACCAAGCGTTTGGGGGAATAAACGATTCGAGTGCAGCGTGAAGTGGGAGGGCGAGTGCCACCGTTTCATTGCATACAATCAGAAGAAGGACAGAGACAAGTGCAGAGTCTGTTTATGGAAAATAAAACCAGAAGCTGCATGTATATATAACTACGCCAAGAAGGATTACGATTGCCCTCCATGGTGGGACTGGTACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

141

Amino Acids

16.56

Weight (kDa)

8.05

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 135 3.9e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 3 cut(s) 24, 84, 416
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 309
AlwNI CAGNNNCTG 2 cut(s) 330, 356
ApeKI GCWGC 3 cut(s) 40, 255, 356
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 88, 133
AvaII GGWCC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 27, 267, 343
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 151
BglII AGATCT 1 cut(s) 155
BisI GCNGC 3 cut(s) 41, 256, 357
BlsI GCNGC 3 cut(s) 42, 257, 358
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 178, 189
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 416
BseXI GCAGC 3 cut(s) 27, 267, 343
BsgI GTGCAG 2 cut(s) 274, 343
Bsh1236I CGCG 1 cut(s) 87
BslFI GGGAC 2 cut(s) 173, 176
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 173, 176
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 93, 155, 169
Bsp19I CCATGG 1 cut(s) 401
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 178, 189
BsrDI GCAATG 1 cut(s) 288
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 3 cut(s) 93, 155, 169
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 152, 284, 419
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 38, 45
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 3 cut(s) 96, 158, 172
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 3 cut(s) 93, 155, 169
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 27, 267, 343
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 231
BstYI RGATCY 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 401
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 38, 45
CaiI CAGNNNCTG 2 cut(s) 330, 356
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 23, 83, 415
CviAII CATG 3 cut(s) 182, 360, 402
CviJI RGCY 3 cut(s) 5, 36, 356
CviKI_1 RGCY 3 cut(s) 5, 36, 356
CviQI GTAC 3 cut(s) 23, 83, 415
DdeI CTNAG 1 cut(s) 32
DpnI GATC 3 cut(s) 95, 157, 171
DpnII GATC 3 cut(s) 93, 155, 169
Eco130I CCWWGG 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 3 cut(s) 185, 363, 405
FaiI YATR 9 cut(s) 92, 183, 295, 337, 361, 365, 367, 369, 403
FaqI GGGAC 2 cut(s) 173, 176
FatI CATG 3 cut(s) 181, 359, 401
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 41, 256, 357
Fsp4HI GCNGC 3 cut(s) 41, 256, 357
FspBI CTAG 1 cut(s) 159
GluI GCNGC 3 cut(s) 41, 256, 357
Hin1II CATG 3 cut(s) 185, 363, 405
HinfI GANTC 2 cut(s) 246, 327
HphI GGTGA 2 cut(s) 88, 133
Hpy188I TCNGA 3 cut(s) 112, 202, 303
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 155, 301, 376
HpyCH4III ACNGT 3 cut(s) 152, 284, 419
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 6 cut(s) 14, 47, 255, 293, 324, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 3 cut(s) 185, 363, 405
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 155, 169
LpnPI CCDG 5 cut(s) 50, 68, 104, 363, 397
Lsp1109I GCAGC 3 cut(s) 27, 267, 343
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 95, 157, 171
MboI GATC 3 cut(s) 93, 155, 169
MboII GAAGA 1 cut(s) 316
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 209
MluI ACGCGT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 3 cut(s) 178, 262, 408
MseI TTAA 1 cut(s) 421
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 401
NdeII GATC 3 cut(s) 93, 155, 169
NlaIII CATG 3 cut(s) 185, 363, 405
NlaIV GGNNCC 2 cut(s) 178, 189
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 42, 257, 358
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 178, 189
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 330, 356
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 3 cut(s) 24, 84, 416
RsaNI GTAC 3 cut(s) 23, 83, 415
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 3 cut(s) 41, 256, 357
Sau3AI GATC 3 cut(s) 93, 155, 169
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 336
SetI ASST 4 cut(s) 130, 135, 189, 358
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 1 cut(s) 187
Sse9I AATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 3 cut(s) 152, 284, 419
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 209
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 40, 255, 356
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 277
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.