Prupe.8G012700_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000577
Physical Location & Seq
Reverse (-)
1050066 .. 1050479
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G012700.1

Sequence Viewer

Length: 414 bp
ATGGCTGTCCCTTTTAGAACTGTGGTGGTGCTAACATTTCTTCTGATTCTAAGAACTACATGTTATGCAGCGGTCGTCAATCCTGTAACTCATGTCAACATCATCAACTATTTGCGTTTAGGCGTCGACCTTACGGTTCATTGTAAATCCAAGGATGACGATCTTGGTGTTCACGTAATACCCCCTGATGGATCATGGGAATTCCAGTTTCGACCAAATTTTTGGAATTCTACACAATATTTTTGCAAATTTGATTGGAATGGCGGATCTTATTGGTTTGATATATACATTCAACTGAGAGACAAACCTTACTGCGTGAAGAACTGTGACTGGCTCATAATACCGAATGGTGCATGCAGGAAAGTTGAAGGGGTGCCTCATGCGGTAGACAAGTGCTATCCTTGGAATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

15.92

Weight (kDa)

7.58

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 2 cut(s) 126, 387
AciI CCGC 3 cut(s) 71, 264, 383
AclWI GGATC 2 cut(s) 199, 274
AcsI RAATTY 4 cut(s) 200, 217, 226, 248
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 293, 368
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 2 cut(s) 199, 274
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 4 cut(s) 200, 217, 226, 248
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
BanI GGYRCC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 80
BccI CCATC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 294
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 150, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 205, 335
Bse8I GATNNNNATC 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 150, 401
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 205, 335
BseXI GCAGC 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 160, 191, 266
BspACI CCGC 3 cut(s) 71, 264, 383
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 2 cut(s) 199, 274
BspT107I GGYRCC 1 cut(s) 373
BsrI ACTGG 2 cut(s) 205, 335
BssECI CCNNGG 2 cut(s) 150, 401
BssMI GATC 3 cut(s) 160, 191, 266
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 2 cut(s) 150, 401
Bst4CI ACNGT 3 cut(s) 22, 136, 326
BstACI GRCGYC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 50, 296
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 3 cut(s) 163, 194, 269
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 3 cut(s) 160, 191, 266
BstMCI CGRYCG 1 cut(s) 75
BstNSI RCATGY 2 cut(s) 63, 357
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 266
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 355
CseI GACGC 1 cut(s) 112
CviAII CATG 5 cut(s) 60, 92, 195, 354, 380
CviJI RGCY 2 cut(s) 5, 334
CviKI_1 RGCY 2 cut(s) 5, 334
DdeI CTNAG 2 cut(s) 50, 296
DpnI GATC 3 cut(s) 162, 193, 268
DpnII GATC 3 cut(s) 160, 191, 266
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 150, 401
EcoRI GAATTC 2 cut(s) 200, 226
EcoT14I CCWWGG 2 cut(s) 150, 401
ErhI CCWWGG 2 cut(s) 150, 401
FaeI CATG 5 cut(s) 63, 95, 198, 357, 383
FatI CATG 5 cut(s) 59, 91, 194, 353, 379
FblI GTMKAC 2 cut(s) 126, 387
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HgaI GACGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 63, 95, 198, 357, 383
HincII GTYRAC 2 cut(s) 97, 127
HindII GTYRAC 2 cut(s) 97, 127
HinfI GANTC 2 cut(s) 46, 406
Hpy166II GTNNAC 4 cut(s) 97, 127, 172, 388
Hpy188I TCNGA 1 cut(s) 45
Hpy8I GTNNAC 4 cut(s) 97, 127, 172, 388
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 3 cut(s) 22, 136, 326
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 4 cut(s) 68, 246, 353, 357
HpyF3I CTNAG 2 cut(s) 50, 296
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 63, 95, 198, 357, 383
Kzo9I GATC 3 cut(s) 160, 191, 266
LpnPI CCDG 5 cut(s) 96, 198, 218, 316, 343
Lsp1109I GCAGC 1 cut(s) 80
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 85, 326
MalI GATC 3 cut(s) 162, 193, 268
MboI GATC 3 cut(s) 160, 191, 266
MboII GAAGA 2 cut(s) 32, 331
MflI RGATCY 1 cut(s) 266
MluCI AATT 4 cut(s) 200, 217, 226, 248
MnlI CCTC 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 71
NdeII GATC 3 cut(s) 160, 191, 266
NlaIII CATG 5 cut(s) 63, 95, 198, 357, 383
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 2 cut(s) 63, 357
PaeI GCATGC 1 cut(s) 357
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 2 cut(s) 46, 406
PkrI GCNGC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 175
PscI ACATGT 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 375
PsuI RGATCY 1 cut(s) 266
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 160, 191, 266
SetI ASST 3 cut(s) 132, 177, 310
SphI GCATGC 1 cut(s) 357
Sse9I AATT 4 cut(s) 200, 217, 226, 248
SsiI CCGC 3 cut(s) 71, 264, 383
SspI AATATT 1 cut(s) 239
StyI CCWWGG 2 cut(s) 150, 401
TaaI ACNGT 3 cut(s) 22, 136, 326
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 126, 211
TasI AATT 4 cut(s) 200, 217, 226, 248
TfiI GAWTC 2 cut(s) 46, 406
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 128
XapI RAATTY 4 cut(s) 200, 217, 226, 248
XceI RCATGY 2 cut(s) 63, 357
XmiI GTMKAC 2 cut(s) 126, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.