MD07G1270000.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000577
Physical Location & Seq
Reverse (-)
33722979 .. 33723413
435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1270000.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGCTTTGTTCACAAGAAATCTTGTGCTAGTGCTGTTTTTGCTTACAATAACCCTGTGCGATGCAGGTATAAGTATTCATCGGAAAAGAAGACATGTAAGAGTGAAAAATTTCTTGCAACTGAACGGAACGTTGTTCACGCTTACCCTTCACTGCAAATCCAAGGACGATGATCTTGGTAAGAAAGTGATCCCCTTCAATGGTTCCTGGGAGTTCGATTTTATTCCTCATTTCTTAGGCGCAACATTATACTTCTGCGGTTTTGCATGGCCGGGTCAATTTAAGTGGTTTAACGTATATAACGACGACAGAGACATCGACCGTGCTAGTAAGTTCCAGTGGAGTATATATCCTCCAGGCCCATGTAGGGTTGATTGGTTCAACGAGTCAATTGTCGAGGGGACATGCTACCATTGGAACGGTGAAGCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

145

Amino Acids

16.84

Weight (kDa)

8.3

Isoelectric Point (pI)

15.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 32 - 139 6.9e-22 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AciI CCGC 1 cut(s) 258
AclI AACGTT 1 cut(s) 131
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 200, 367
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 199, 382
AjnI CCWGG 2 cut(s) 206, 355
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 184
AoxI GGCC 2 cut(s) 269, 358
ApoI RAATTY 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 208, 357
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 29, 327
BfuAI ACCTGC 1 cut(s) 56
Bme1390I CCNGG 3 cut(s) 208, 273, 357
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 208, 273, 357
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 162, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 367
Bse1I ACTGG 1 cut(s) 337
BseBI CCWGG 2 cut(s) 208, 357
BseDI CCNNGG 2 cut(s) 162, 207
BseLI CCNNNNNNNGG 2 cut(s) 200, 367
BseNI ACTGG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 322
BshFI GGCC 2 cut(s) 271, 360
BsiEI CGRYCG 1 cut(s) 322
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 200, 367
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 415
BsnI GGCC 2 cut(s) 271, 360
Bsp143I GATC 2 cut(s) 172, 189
BspACI CCGC 1 cut(s) 258
BspANI GGCC 2 cut(s) 271, 360
BspLI GGNNCC 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 162, 207
BssMI GATC 2 cut(s) 172, 189
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 2 cut(s) 208, 357
Bst4CI ACNGT 2 cut(s) 323, 422
BstDEI CTNAG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 2 cut(s) 175, 192
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 2 cut(s) 172, 189
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNI CCWGG 2 cut(s) 208, 357
BstNSI RCATGY 2 cut(s) 98, 408
BstSCI CCNGG 3 cut(s) 206, 271, 355
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 271, 360
BtgZI GCGATG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 344
BveI ACCTGC 1 cut(s) 56
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 266, 301
CviAII CATG 4 cut(s) 95, 267, 363, 405
CviJI RGCY 4 cut(s) 5, 271, 360, 428
CviKI_1 RGCY 4 cut(s) 5, 271, 360, 428
DdeI CTNAG 1 cut(s) 235
DpnI GATC 2 cut(s) 174, 191
DpnII GATC 2 cut(s) 172, 189
EaeI YGGCCR 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 206, 355
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 98, 270, 366, 408
FaqI GGGAC 1 cut(s) 415
FatI CATG 4 cut(s) 94, 266, 362, 404
FspBI CTAG 2 cut(s) 29, 327
GlaI GCGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 2 cut(s) 271, 360
HapII CCGG 1 cut(s) 272
HhaI GCGC 1 cut(s) 242
Hin1II CATG 4 cut(s) 98, 270, 366, 408
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 1 cut(s) 386
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 2 cut(s) 12, 138
Hpy188I TCNGA 1 cut(s) 84
Hpy8I GTNNAC 2 cut(s) 12, 138
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 158, 205
HpyCH4III ACNGT 2 cut(s) 323, 422
HpyCH4IV ACGT 2 cut(s) 131, 294
HpyCH4V TGCA 4 cut(s) 65, 118, 156, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 2 cut(s) 131, 294
Hsp92II CATG 4 cut(s) 98, 270, 366, 408
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 2 cut(s) 172, 189
LpnPI CCDG 8 cut(s) 51, 68, 193, 220, 285, 342, 350, 369
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 29, 327
MaeII ACGT 2 cut(s) 131, 294
MalI GATC 2 cut(s) 174, 191
MboI GATC 2 cut(s) 172, 189
MboII GAAGA 1 cut(s) 102
MfeI CAATTG 1 cut(s) 390
MluCI AATT 3 cut(s) 109, 278, 390
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 3 cut(s) 237, 363, 391
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 282, 291
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 3 cut(s) 208, 273, 357
MunI CAATTG 1 cut(s) 390
MvaI CCWGG 2 cut(s) 208, 357
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 273
NdeII GATC 2 cut(s) 172, 189
NlaIII CATG 4 cut(s) 98, 270, 366, 408
NlaIV GGNNCC 1 cut(s) 205
NspI RCATGY 2 cut(s) 98, 408
PciI ACATGT 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 110
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 94
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 206, 355
PspGI CCWGG 2 cut(s) 206, 355
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 282, 291
Sau3AI GATC 2 cut(s) 172, 189
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 208, 273, 357
SetI ASST 4 cut(s) 70, 134, 297, 430
SfaNI GCATC 1 cut(s) 52
Sse9I AATT 3 cut(s) 109, 278, 390
SsiI CCGC 1 cut(s) 258
SspMI CTAG 2 cut(s) 29, 327
StyD4I CCNGG 3 cut(s) 206, 271, 355
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 323, 422
TaiI ACGT 2 cut(s) 134, 297
TaqI TCGA 3 cut(s) 216, 318, 396
TasI AATT 3 cut(s) 109, 278, 390
Tru1I TTAA 2 cut(s) 282, 291
Tru9I TTAA 2 cut(s) 282, 291
TscAI CASTG 2 cut(s) 158, 344
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 158, 344
XapI RAATTY 1 cut(s) 109
XceI RCATGY 2 cut(s) 98, 408
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 29, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.