Rroxscaffold_5G00341610

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000577
Physical Location & Seq
Reverse (-)
10128715 .. 10130413
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341610.1

Sequence Viewer

Length: 696 bp
ATGGCTTCGTTTGCACGGAATGTACAACTCCTAAGCTTGCTACTTGCAGTTTTCCTGACAACTTGTGATGCTAATGCGAGAGTACGCGTTCTGATCACCAACGAAATATCGGAGTATCAGGGGAAACCTAACGTGACAATCACCCTTCACTGTAGATCTAGGGACGATGATCTTGGGTCACATGAGGTCCCCTATCTTTCCAACTACGAATTTACTTTCAAACCAAGCGTTTGGGGGAATAAACGATTCGAGTGCAGCGTGAAGTGGGAGGGCGAGTTTCACCGTTTCGTTGCATACAATCAGAAGAAGGACAGAGACAAGTGCAGAGTCTGTTTATGGAAAATAAAACCAGAAGCTGCATCTAGTATATTCGGTAGAGTACATGTTAAACTCTCAAACGAGCTAGGTCAAGGATTGGTCCTGAACCTTCATTGCAAATCAAGAGATGATGATATCGGAACACATGCCCTCCCCATTCATGGCTCGTTTCAGTTTAGTTTCCGACCAAGCGTTATTCGGACTACAGTCTTTACATGCAGTTTTCAATGGAATGGTGGATATCACGTTGCAGAAATTTACAACCACGACAGAGATAGGTGTAGAAATTGTACGTGGAGTATAATACCATCAGGACCATGCTTCTACAACTTCGACACCAAGAAGTCTTATTGTTATTTGTGGCCTCAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

231

Amino Acids

26.82

Weight (kDa)

9.04

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 118 3.4e-19 Plant self-incompatibility protein S1
Self-incomp_S1 PF05938 128 - 227 1.6e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AcsI RAATTY 2 cut(s) 209, 573
AfaI GTAC 4 cut(s) 24, 84, 381, 610
AfiI CCNNNNNNNGG 1 cut(s) 479
AflIII ACRYGT 2 cut(s) 85, 382
AgsI TTSAA 2 cut(s) 220, 545
AluBI AGCT 3 cut(s) 36, 356, 403
AluI AGCT 3 cut(s) 36, 356, 403
Alw26I GTCTC 1 cut(s) 309
AlwNI CAGNNNCTG 2 cut(s) 330, 356
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 2 cut(s) 255, 356
ApoI RAATTY 2 cut(s) 209, 573
AspS9I GGNCC 3 cut(s) 187, 418, 632
AsuHPI GGTGA 3 cut(s) 88, 133, 272
AvaII GGWCC 3 cut(s) 187, 418, 632
BbvI GCAGC 2 cut(s) 267, 343
BccI CCATC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 3 cut(s) 159, 363, 404
BfmI CTRYAG 2 cut(s) 151, 522
BglII AGATCT 1 cut(s) 155
BisI GCNGC 2 cut(s) 256, 357
BlsI GCNGC 2 cut(s) 257, 358
Bme18I GGWCC 3 cut(s) 187, 418, 632
BmgT120I GGNCC 3 cut(s) 187, 418, 632
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 2 cut(s) 58, 368
BoxI GACNNNNGTC 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 612
BsaXI ACNNNNNCTCC 4 cut(s) 260, 290, 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 430
BseXI GCAGC 2 cut(s) 267, 343
BsgI GTGCAG 2 cut(s) 274, 343
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 682
BslFI GGGAC 2 cut(s) 173, 176
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 173, 176
BsnI GGCC 1 cut(s) 682
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 93, 155, 169
BspANI GGCC 1 cut(s) 682
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 22
BssMI GATC 3 cut(s) 93, 155, 169
Bst4CI ACNGT 3 cut(s) 152, 284, 526
BstAUI TGTACA 1 cut(s) 22
BstBAI YACGTR 1 cut(s) 612
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 3 cut(s) 96, 158, 172
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 3 cut(s) 93, 155, 169
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 3 cut(s) 386, 467, 537
BstPAI GACNNNNGTC 1 cut(s) 524
BstSFI CTRYAG 2 cut(s) 151, 522
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 267, 343
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 231
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 1 cut(s) 682
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 38
CaiI CAGNNNCTG 2 cut(s) 330, 356
Cfr13I GGNCC 3 cut(s) 187, 418, 632
Csp6I GTAC 4 cut(s) 23, 83, 380, 609
CviAII CATG 6 cut(s) 182, 383, 464, 479, 534, 636
CviJI RGCY 6 cut(s) 5, 36, 356, 403, 483, 682
CviKI_1 RGCY 6 cut(s) 5, 36, 356, 403, 483, 682
CviQI GTAC 4 cut(s) 23, 83, 380, 609
DdeI CTNAG 1 cut(s) 32
DpnI GATC 3 cut(s) 95, 157, 171
DpnII GATC 3 cut(s) 93, 155, 169
Eco32I GATATC 2 cut(s) 454, 560
Eco47I GGWCC 3 cut(s) 187, 418, 632
EcoO109I RGGNCCY 1 cut(s) 187
EcoRV GATATC 2 cut(s) 454, 560
FaeI CATG 6 cut(s) 185, 386, 467, 482, 537, 639
FaqI GGGAC 2 cut(s) 173, 176
FatI CATG 6 cut(s) 181, 382, 463, 478, 533, 635
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 256, 357
Fsp4HI GCNGC 2 cut(s) 256, 357
FspBI CTAG 3 cut(s) 159, 363, 404
GluI GCNGC 2 cut(s) 256, 357
HaeIII GGCC 1 cut(s) 682
Hin1II CATG 6 cut(s) 185, 386, 467, 482, 537, 639
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 2 cut(s) 246, 327
HphI GGTGA 3 cut(s) 88, 133, 272
Hpy188I TCNGA 6 cut(s) 93, 112, 303, 458, 503, 519
Hpy188III TCNNGA 4 cut(s) 55, 421, 441, 630
HpyAV CCTTC 3 cut(s) 155, 301, 437
HpyCH4III ACNGT 3 cut(s) 152, 284, 526
HpyCH4IV ACGT 3 cut(s) 132, 564, 611
HpyCH4V TGCA 9 cut(s) 14, 47, 255, 293, 324, 359, 435, 537, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 3 cut(s) 132, 564, 611
Hsp92II CATG 6 cut(s) 185, 386, 467, 482, 537, 639
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 155, 169
LpnPI CCDG 5 cut(s) 68, 104, 363, 434, 615
Lsp1109I GCAGC 2 cut(s) 267, 343
LweI GCATC 2 cut(s) 58, 368
MaeI CTAG 3 cut(s) 159, 363, 404
MaeII ACGT 3 cut(s) 132, 564, 611
MaeIII GTNAC 2 cut(s) 133, 177
MalI GATC 3 cut(s) 95, 157, 171
MboI GATC 3 cut(s) 93, 155, 169
MboII GAAGA 1 cut(s) 316
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 209, 573, 604
MluI ACGCGT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 225, 526
MnlI CCTC 4 cut(s) 178, 262, 479, 693
MseI TTAA 1 cut(s) 387
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 93, 155, 169
NlaIII CATG 6 cut(s) 185, 386, 467, 482, 537, 639
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 133, 177
NspI RCATGY 3 cut(s) 386, 467, 537
PciI ACATGT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 2 cut(s) 257, 358
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 612
PpuMI RGGWCCY 1 cut(s) 187
PscI ACATGT 1 cut(s) 382
PshAI GACNNNNGTC 1 cut(s) 524
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 3 cut(s) 187, 418, 632
PspPPI RGGWCCY 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 330, 356
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 4 cut(s) 24, 84, 381, 610
RsaNI GTAC 4 cut(s) 23, 83, 380, 609
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 256, 357
Sau3AI GATC 3 cut(s) 93, 155, 169
Sau96I GGNCC 3 cut(s) 187, 418, 632
SchI GAGTC 1 cut(s) 336
SfaNI GCATC 2 cut(s) 58, 368
SfcI CTRYAG 2 cut(s) 151, 522
SinI GGWCC 3 cut(s) 187, 418, 632
Sse9I AATT 3 cut(s) 209, 573, 604
SspMI CTAG 3 cut(s) 159, 363, 404
TaaI ACNGT 3 cut(s) 152, 284, 526
TaiI ACGT 3 cut(s) 135, 567, 614
TaqI TCGA 2 cut(s) 249, 651
TasI AATT 3 cut(s) 209, 573, 604
TatI WGTACW 2 cut(s) 22, 379
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 2 cut(s) 133, 177
TseI GCWGC 2 cut(s) 255, 356
Tsp45I GTSAC 2 cut(s) 133, 177
TspDTI ATGAA 2 cut(s) 419, 467
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 3 cut(s) 187, 418, 632
XapI RAATTY 2 cut(s) 209, 573
XceI RCATGY 3 cut(s) 386, 467, 537
XspI CTAG 3 cut(s) 159, 363, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.