Prupe.1G055600_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000577
Physical Location & Seq
Reverse (-)
3928205 .. 3928639
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G055600.1

Sequence Viewer

Length: 435 bp
ATGGCTTCCTTCATTAGAAATGCAGTTTTGCTAATGCTGCTTTTGGTGTTCTCAACGTCCATTTGTGATGCTCGGAAGAGAAGATTTGTTCGAGTGGAAAATAATTTGGCTTTGGATGGAGACTTGAGCCTTACCGTTCACTGCAAATCCAGAGACGATGATCTTGGTGTCAAAGTGCTCCCGATTAATGGCACATTTGAATTCAGTTTCAAGCCTAACTTTATTCACACAACACAATTCTACTGCAGTTTTCAGTGGCCAGGTAGATTTGAGTGGTTCGACATATATAAAGATTCGGCAGACAAATGCAGTTTGTGTTACTGGAAAGTATTTCCTAGCGCGGTATGCAGGTTGAGCTGGGAGTTCGACATTAACGGTGCTTACACCGATTGCTATCCGTGGAATGATCATGCCACTCATATTATCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

6.87

Isoelectric Point (pI)

23.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 339
AccII CGCG 1 cut(s) 341
AciI CCGC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 200, 211
AjnI CCWGG 1 cut(s) 259
AluBI AGCT 1 cut(s) 357
AluI AGCT 1 cut(s) 357
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 114, 147
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 200
AseI ATTAAT 1 cut(s) 186
AspLEI GCGC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 114, 147
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 339
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 58
BpuEI CTTGAG 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 114, 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 160, 406
BspACI CCGC 1 cut(s) 341
BspANI GGCC 1 cut(s) 259
BspFNI CGCG 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 248
BspMI ACCTGC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 2 cut(s) 160, 406
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 136, 377
Bst6I CTCTTC 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 2 cut(s) 163, 409
BstMAI GTCTC 2 cut(s) 114, 147
BstMBI GATC 2 cut(s) 160, 406
BstMWI GCNNNNNNNGC 3 cut(s) 37, 345, 354
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 139, 260
BveI ACCTGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 341
CviAII CATG 1 cut(s) 410
CviJI RGCY 6 cut(s) 5, 110, 129, 214, 259, 357
CviKI_1 RGCY 6 cut(s) 5, 110, 129, 214, 259, 357
DpnI GATC 2 cut(s) 162, 408
DpnII GATC 2 cut(s) 160, 406
EaeI YGGCCR 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 1 cut(s) 413
FaiI YATR 6 cut(s) 284, 286, 288, 346, 411, 420
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 1 cut(s) 409
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 361
HaeIII GGCC 1 cut(s) 259
HhaI GCGC 1 cut(s) 341
Hin1II CATG 1 cut(s) 413
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 150, 181
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 136, 377
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 5 cut(s) 23, 144, 246, 309, 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 345, 354
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 413
HspAI GCGC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 2 cut(s) 160, 406
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 163, 246, 273, 307, 334, 343
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 162, 408
MboI GATC 2 cut(s) 160, 406
MboII GAAGA 2 cut(s) 88, 93
MhlI GDGCHC 1 cut(s) 180
MlsI TGGCCA 1 cut(s) 259
MluCI AATT 3 cut(s) 103, 200, 236
MluNI TGGCCA 1 cut(s) 259
Mox20I TGGCCA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 259
MseI TTAA 3 cut(s) 186, 372, 433
Msp20I TGGCCA 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 37, 345, 354
NdeII GATC 2 cut(s) 160, 406
NlaIII CATG 1 cut(s) 413
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 357
PspGI CCWGG 1 cut(s) 259
PstI CTGCAG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 186, 372, 433
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 160, 406
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 180
SetI ASST 4 cut(s) 59, 265, 353, 359
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 244
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 3 cut(s) 103, 200, 236
SsiI CCGC 1 cut(s) 341
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 136, 377
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 91, 279, 366
TasI AATT 3 cut(s) 103, 200, 236
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 3 cut(s) 186, 372, 433
Tru9I TTAA 3 cut(s) 186, 372, 433
TscAI CASTG 2 cut(s) 146, 260
TseI GCWGC 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 387
TspRI CASTG 2 cut(s) 146, 260
VspI ATTAAT 1 cut(s) 186
XapI RAATTY 1 cut(s) 200
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.