AT3G17080

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000577
Physical Location & Seq
Forward (+)
5825289 .. 5825867
579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17080.1

Sequence Viewer

Length: 405 bp
ATGGGTTCTCTTGAGACATGCTTACTTTTCTTTGTAATGGTTATGTTTATGAGTGCAATTATGTCTCGAGCCTCGACGAGTGTAGTGATTTATAATGATCTTGGAGGTGGTTTGCCACTACGGCACCACTGCAAATCAAGAGAGGATGATCTTGGATACCAGAGTTTAGCACCAGGTAGATCGTGGTCGTTTGGATTTACACCGGATATTTTTGGCCGGACTTTGTTTTACTGTCGTTTTAGTTGGGGAGCTGAGAGTCATATATTTGATATCTACAAACAGAGTAGAGACAAAGAATTTCAAGAGTTTGGTTGCAAAAAATGCGAATGGAAAATACGGAAAAATGGACCTTGCAAGTTTTATAAGAAGACCGGCATGTTTGATCATTGCTATTCTTGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

134

Amino Acids

15.64

Weight (kDa)

8.69

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 28 - 133 3.2e-30 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 93, 363
AccB1I GGYRCC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 296
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw26I GTCTC 3 cut(s) 8, 69, 282
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 1 cut(s) 347
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 149
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 3 cut(s) 8, 69, 282
BfuI GTATCC 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 216
BshNI GGYRCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 3 cut(s) 203, 217, 372
BsmAI GTCTC 3 cut(s) 8, 69, 282
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 66
Bsp143I GATC 4 cut(s) 97, 148, 179, 382
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssMI GATC 4 cut(s) 97, 148, 179, 382
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 233
BstAPI GCANNNNNTGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 4 cut(s) 100, 151, 182, 385
BstMAI GTCTC 3 cut(s) 8, 69, 282
BstMBI GATC 4 cut(s) 97, 148, 179, 382
BstMWI GCNNNNNNNGC 2 cut(s) 121, 321
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 21, 379
BstSCI CCNGG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 374
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 347
CsiI ACCWGGT 1 cut(s) 172
CviAII CATG 2 cut(s) 18, 376
CviJI RGCY 3 cut(s) 71, 216, 251
CviKI_1 RGCY 3 cut(s) 71, 216, 251
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 99, 150, 181, 384
DpnII GATC 4 cut(s) 97, 148, 179, 382
EaeI YGGCCR 1 cut(s) 214
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 271
FaeI CATG 2 cut(s) 21, 379
FaiI YATR 9 cut(s) 19, 44, 50, 62, 93, 261, 263, 363, 377
FatI CATG 2 cut(s) 17, 375
FbaI TGATCA 1 cut(s) 382
FokI GGATG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 216
HapII CCGG 3 cut(s) 203, 217, 372
Hin1II CATG 2 cut(s) 21, 379
HinfI GANTC 1 cut(s) 256
HpaII CCGG 3 cut(s) 203, 217, 372
Hpy188III TCNNGA 4 cut(s) 11, 66, 138, 302
Hpy99I CGWCG 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 4 cut(s) 56, 132, 315, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 321
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 2 cut(s) 21, 379
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 97, 148, 179, 382
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 6 cut(s) 159, 173, 186, 216, 230, 385
MabI ACCWGGT 1 cut(s) 172
MalI GATC 4 cut(s) 99, 150, 181, 384
MboI GATC 4 cut(s) 97, 148, 179, 382
MboII GAAGA 1 cut(s) 379
MluCI AATT 2 cut(s) 57, 296
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 3 cut(s) 82, 98, 136
MseI TTAA 1 cut(s) 403
MspI CCGG 3 cut(s) 203, 217, 372
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 121, 321
NdeII GATC 4 cut(s) 97, 148, 179, 382
NlaIII CATG 2 cut(s) 21, 379
NlaIV GGNNCC 1 cut(s) 125
NspI RCATGY 2 cut(s) 21, 379
PaeR7I CTCGAG 1 cut(s) 66
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PsiI TTATAA 2 cut(s) 93, 363
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 403
Sau3AI GATC 4 cut(s) 97, 148, 179, 382
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 174
SetI ASST 4 cut(s) 109, 178, 253, 352
SexAI ACCWGGT 1 cut(s) 172
Sfr274I CTCGAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 11, 66
SmoI CTYRAG 2 cut(s) 11, 66
Sse9I AATT 2 cut(s) 57, 296
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 2 cut(s) 67, 74
TasI AATT 2 cut(s) 57, 296
Tru1I TTAA 1 cut(s) 403
Tru9I TTAA 1 cut(s) 403
TscAI CASTG 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 347
XapI RAATTY 1 cut(s) 296
XceI RCATGY 2 cut(s) 21, 379
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XhoI CTCGAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.