Rorug03G0282200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000577
Physical Location & Seq
Reverse (-)
28323441 .. 28324249
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0282200.1

Sequence Viewer

Length: 597 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCCCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

198

Amino Acids

21.67

Weight (kDa)

5.95

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 6.3e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 1 cut(s) 531
AclI AACGTT 1 cut(s) 552
AclWI GGATC 2 cut(s) 141, 330
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 91, 328
AfeI AGCGCT 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 2 cut(s) 92, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 565, 587
AluI AGCT 4 cut(s) 53, 199, 565, 587
Alw21I GWGCWC 2 cut(s) 453, 567
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 2 cut(s) 141, 330
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 581
Aor51HI AGCGCT 1 cut(s) 502
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 50, 293, 587
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 3 cut(s) 164, 306, 453
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 453, 567
BbvI GCAGC 3 cut(s) 62, 280, 574
BccI CCATC 1 cut(s) 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 2 cut(s) 94, 419
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 2 cut(s) 315, 595
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 504
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 588
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 3 cut(s) 52, 295, 589
Bme1390I CCNGG 2 cut(s) 94, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 3 cut(s) 6, 245, 358
BmrFI CCNGG 2 cut(s) 94, 419
BpmI CTGGAG 4 cut(s) 93, 179, 282, 399
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 113, 581
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 2 cut(s) 94, 419
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 389, 578
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 540, 580
BseNI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseRI GAGGAG 3 cut(s) 44, 420, 423
BseSI GKGCMC 3 cut(s) 164, 306, 453
BseXI GCAGC 3 cut(s) 62, 280, 574
BsiHKAI GWGCWC 2 cut(s) 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 262, 306, 453, 567
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 5 cut(s) 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 566
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 539, 579
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 3 cut(s) 6, 245, 358
BspPI GGATC 2 cut(s) 141, 330
BsrI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 5 cut(s) 133, 186, 335, 343, 412
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 419
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 526, 566
BstEII GGTNACC 2 cut(s) 470, 533
BstF5I GGATG 2 cut(s) 389, 578
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 5 cut(s) 136, 189, 338, 346, 415
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 133, 186, 335, 343, 412
BstNI CCWGG 2 cut(s) 94, 419
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 470, 533
BstSCI CCNGG 2 cut(s) 92, 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 453
BstV1I GCAGC 3 cut(s) 62, 280, 574
BstX2I RGATCY 3 cut(s) 133, 186, 335
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 335
BtsCI GGATG 2 cut(s) 389, 578
BtsIMutI CAGTG 3 cut(s) 306, 360, 547
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 357
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 526, 566
DpnI GATC 5 cut(s) 135, 188, 337, 345, 414
DpnII GATC 5 cut(s) 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 565
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco47III AGCGCT 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 470, 533
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 2 cut(s) 470, 533
EcoRII CCWGG 2 cut(s) 92, 417
EcoT38I GRGCYC 2 cut(s) 262, 567
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 5 cut(s) 71, 144, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 588
FokI GGATG 2 cut(s) 376, 565
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 3 cut(s) 51, 294, 588
FspBI CTAG 2 cut(s) 315, 595
GlaI GCGC 1 cut(s) 502
GluI GCNGC 3 cut(s) 51, 294, 588
GsuI CTGGAG 4 cut(s) 93, 179, 282, 399
HaeII RGCGCY 1 cut(s) 504
HapII CCGG 1 cut(s) 582
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 582
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 2 cut(s) 472, 488
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 3 cut(s) 252, 462, 552
HpyCH4V TGCA 2 cut(s) 397, 451
HpyF3I CTNAG 2 cut(s) 526, 566
HpySE526I ACGT 3 cut(s) 252, 462, 552
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 5 cut(s) 133, 186, 335, 343, 412
LmnI GCTCC 2 cut(s) 301, 584
Lsp1109I GCAGC 3 cut(s) 62, 280, 574
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 595
MaeII ACGT 3 cut(s) 252, 462, 552
MaeIII GTNAC 3 cut(s) 470, 509, 533
MalI GATC 5 cut(s) 135, 188, 337, 345, 414
MboI GATC 5 cut(s) 133, 186, 335, 343, 412
MboII GAAGA 1 cut(s) 425
MflI RGATCY 3 cut(s) 133, 186, 335
MhlI GDGCHC 5 cut(s) 164, 262, 306, 453, 567
MluCI AATT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 581
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 2 cut(s) 94, 419
MvaI CCWGG 2 cut(s) 94, 419
NdeII GATC 5 cut(s) 133, 186, 335, 343, 412
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 3 cut(s) 6, 245, 358
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 589
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 92, 417
PspEI GGTNACC 2 cut(s) 470, 533
PspGI CCWGG 2 cut(s) 92, 417
PspN4I GGNNCC 3 cut(s) 6, 245, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 3 cut(s) 133, 186, 335
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 588
Sau3AI GATC 5 cut(s) 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 2 cut(s) 94, 419
SduI GDGCHC 5 cut(s) 164, 262, 306, 453, 567
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 560
SmoI CTYRAG 3 cut(s) 128, 261, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 531
SspMI CTAG 2 cut(s) 315, 595
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 2 cut(s) 92, 417
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 3 cut(s) 255, 465, 555
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 349
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 306, 367, 547
TseI GCWGC 3 cut(s) 50, 293, 587
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 3 cut(s) 306, 367, 547
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 315, 595
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.