FvH4_2g16811

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000577
Physical Location & Seq
Forward (+)
14630984 .. 14633042
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16811.t1

Sequence Viewer

Length: 495 bp
ATGGGATTGTTCACAAGAAATGTTACAATGCTAATCTTGTTAGCGCTGTTCTTAACTGTGTGTGATGCTAATGATGCTAATACAAAAGTGCATGTTAACATCACCAATGATTTGACTGGAAATTCAAGTCTGGCTGTTCATTGTAGAACACGGATCCGCGACCTTGGTGATCAGAAGATTCCCCATGGATCTTCCTTCGTATTTATTTTTGATCAGAACTTCATCACTAAAAGACTGGACTGCAATGTGCACTGGGATCAGGCAGTGGCTCGTAGCTTCATTGCATACGATCAAGATAGAGACAAATACAGGTGCAGCTCCGGATTTTCCTGGAAAAGGTGGCCGGCACTAAAAAGCTTAGACCTTGATGGGTTTCTATGGTGGGCTTCACGTTCTAGTGCACACCCAGTTCTCTGTGCTGCAAAAAGTTTCAATCTTGCTCTCTCATTGAGGATTTTCCTACTTGGTATAGAAGAACTGGGTATTTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

165

Amino Acids

18.67

Weight (kDa)

8.33

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 31 - 112 2.5e-15 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 1 cut(s) 157
AclWI GGATC 4 cut(s) 148, 161, 196, 264
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 1 cut(s) 121
AfeI AGCGCT 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 2 cut(s) 126, 433
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 3 cut(s) 276, 318, 357
AluI AGCT 3 cut(s) 276, 318, 357
Alw21I GWGCWC 2 cut(s) 252, 403
Alw26I GTCTC 1 cut(s) 294
Alw44I GTGCAC 2 cut(s) 248, 399
AlwI GGATC 4 cut(s) 148, 161, 196, 264
Aor13HI TCCGGA 1 cut(s) 320
Aor51HI AGCGCT 1 cut(s) 45
AoxI GGCC 1 cut(s) 341
ApaLI GTGCAC 2 cut(s) 248, 399
ApeKI GCWGC 2 cut(s) 315, 419
ApoI RAATTY 1 cut(s) 121
AspLEI GCGC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 94, 179
BaeGI GKGCMC 2 cut(s) 252, 403
BamHI GGATCC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 252, 403
BbvI GCAGC 2 cut(s) 327, 406
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 331
BclI TGATCA 2 cut(s) 169, 211
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 47
BisI GCNGC 2 cut(s) 316, 420
BlsI GCNGC 2 cut(s) 317, 421
Bme1390I CCNGG 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 3 cut(s) 262, 401, 488
BmsI GCATC 2 cut(s) 55, 64
BmuI ACTGGG 3 cut(s) 262, 401, 488
BsaJI CCNNGG 2 cut(s) 163, 184
BsaWI WCCGGW 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 5 cut(s) 121, 240, 257, 407, 483
Bse3DI GCAATG 2 cut(s) 250, 279
BseAI TCCGGA 1 cut(s) 320
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 163, 184
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMI GCAATG 2 cut(s) 250, 279
BseNI ACTGG 5 cut(s) 121, 240, 257, 407, 483
BseSI GKGCMC 2 cut(s) 252, 403
BseXI GCAGC 2 cut(s) 327, 406
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 252, 403
BsiSI CCGG 2 cut(s) 321, 344
BslI CCNNNNNNNGG 1 cut(s) 336
BsmAI GTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 252, 403
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 6 cut(s) 153, 169, 188, 211, 256, 289
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 343
BspEI TCCGGA 1 cut(s) 320
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 155
BspPI GGATC 4 cut(s) 148, 161, 196, 264
BsrDI GCAATG 2 cut(s) 250, 279
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 5 cut(s) 121, 240, 257, 407, 483
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 163, 184
BssMI GATC 6 cut(s) 153, 169, 188, 211, 256, 289
BssT1I CCWWGG 2 cut(s) 163, 184
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 159
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 6 cut(s) 156, 172, 191, 214, 259, 292
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 6 cut(s) 153, 169, 188, 211, 256, 289
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 329
BstSLI GKGCMC 2 cut(s) 252, 403
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 327, 406
BstX2I RGATCY 2 cut(s) 153, 188
BstYI RGATCY 2 cut(s) 153, 188
BsuRI GGCC 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 250, 270
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 343
CviAII CATG 2 cut(s) 92, 185
CviJI RGCY 7 cut(s) 134, 269, 276, 318, 343, 357, 386
CviKI_1 RGCY 7 cut(s) 134, 269, 276, 318, 343, 357, 386
DdeI CTNAG 1 cut(s) 358
DpnI GATC 6 cut(s) 155, 171, 190, 213, 258, 291
DpnII GATC 6 cut(s) 153, 169, 188, 211, 256, 289
EaeI YGGCCR 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 163, 184
Eco47III AGCGCT 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 163, 184
ErhI CCWWGG 2 cut(s) 163, 184
FaeI CATG 2 cut(s) 95, 188
FaiI YATR 5 cut(s) 93, 186, 286, 379, 470
FatI CATG 2 cut(s) 91, 184
FbaI TGATCA 2 cut(s) 169, 211
Fnu4HI GCNGC 2 cut(s) 316, 420
Fsp4HI GCNGC 2 cut(s) 316, 420
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 45
GluI GCNGC 2 cut(s) 316, 420
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 1 cut(s) 343
HapII CCGG 2 cut(s) 321, 344
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 95, 188
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 1 cut(s) 178
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 321, 344
HphI GGTGA 2 cut(s) 94, 179
Hpy166II GTNNAC 4 cut(s) 12, 97, 250, 401
Hpy188I TCNGA 2 cut(s) 174, 216
Hpy188III TCNNGA 2 cut(s) 293, 321
Hpy8I GTNNAC 4 cut(s) 12, 97, 250, 401
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 7 cut(s) 91, 243, 250, 284, 315, 401, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 2 cut(s) 95, 188
HspAI GCGC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 320
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Ksp22I TGATCA 2 cut(s) 169, 211
KspAI GTTAAC 1 cut(s) 97
Kzo9I GATC 6 cut(s) 153, 169, 188, 211, 256, 289
LmnI GCTCC 1 cut(s) 323
Lsp1109I GCAGC 2 cut(s) 327, 406
LweI GCATC 2 cut(s) 55, 64
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 22
MalI GATC 6 cut(s) 155, 171, 190, 213, 258, 291
MboI GATC 6 cut(s) 153, 169, 188, 211, 256, 289
MboII GAAGA 3 cut(s) 183, 187, 485
MflI RGATCY 2 cut(s) 153, 188
MhlI GDGCHC 2 cut(s) 252, 403
MluCI AATT 1 cut(s) 121
MnlI CCTC 1 cut(s) 444
MroI TCCGGA 1 cut(s) 320
MroNI GCCGGC 1 cut(s) 343
MseI TTAA 2 cut(s) 53, 96
MspI CCGG 2 cut(s) 321, 344
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 74
NaeI GCCGGC 1 cut(s) 345
NcoI CCATGG 1 cut(s) 184
NdeII GATC 6 cut(s) 153, 169, 188, 211, 256, 289
NgoMIV GCCGGC 1 cut(s) 343
NlaIII CATG 2 cut(s) 95, 188
NlaIV GGNNCC 1 cut(s) 155
NspI RCATGY 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 329
PkrI GCNGC 2 cut(s) 317, 421
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 155
PsuI RGATCY 2 cut(s) 153, 188
SaqAI TTAA 2 cut(s) 53, 96
SatI GCNGC 2 cut(s) 316, 420
Sau3AI GATC 6 cut(s) 153, 169, 188, 211, 256, 289
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 2 cut(s) 252, 403
SetI ASST 8 cut(s) 165, 278, 314, 320, 341, 359, 366, 394
SfaNI GCATC 2 cut(s) 55, 64
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 163, 184
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 394
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 53, 96
Tru9I TTAA 2 cut(s) 53, 96
TscAI CASTG 2 cut(s) 257, 270
TseI GCWGC 2 cut(s) 315, 419
TspDTI ATGAA 3 cut(s) 128, 211, 268
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 2 cut(s) 257, 270
VneI GTGCAC 2 cut(s) 248, 399
XagI CCTNNNNNAGG 1 cut(s) 334
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 95
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.