MD17G1052700.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000577
Physical Location & Seq
Reverse (-)
4135374 .. 4135730
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1052700.v1.1.491

Sequence Viewer

Length: 357 bp
ATGTGTGATGCAGTTCGTGTAAGAATGTATAACGATATTGGTCCAGATATACCGTTGACCGTCCACTGCAAATCCAAAAACGATGATCTTGGTACTCATGTGGTTCCCTTTAAAGGTAGCTATGACTTTTCGTTTGGGTTACATCTTTTGGGGCGTACACAATTCTGGTGCAGGTTCGAATGGCTGGCTGTATTTCGCTACTTCGACATATACGTACAAGATAGAGATGAGGGAGGTTGTGATGAGTGCACTTGGAGAATAGCACCGACGGGTCCATGCAGGTTGAATCCAGAATACAATTCGTATAACATTTGCTATTACTGGAACAAGGATGTTCCGACGGCATTTGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

119

Amino Acids

13.82

Weight (kDa)

5.48

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 7 - 108 1.9e-28 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 162, 270
AfaI GTAC 3 cut(s) 94, 157, 216
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw21I GWGCWC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 247
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspS9I GGNCC 2 cut(s) 41, 272
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 2 cut(s) 41, 272
BaeGI GKGCMC 1 cut(s) 251
BaeI ACNNNNGTAYC 2 cut(s) 84, 117
Bbv12I GWGCWC 1 cut(s) 251
BfuAI ACCTGC 2 cut(s) 162, 270
Bme18I GGWCC 2 cut(s) 41, 272
BmgT120I GGNCC 2 cut(s) 41, 272
BmiI GGNNCC 2 cut(s) 105, 273
Bpu14I TTCGAA 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 105, 273
BspMI ACCTGC 2 cut(s) 162, 270
BspT104I TTCGAA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 326
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 54, 61
BstBAI YACGTR 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 251
BstSNI TACGTA 1 cut(s) 214
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 2 cut(s) 162, 270
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 41, 272
Csp6I GTAC 3 cut(s) 93, 156, 215
CviAII CATG 2 cut(s) 98, 276
CviJI RGCY 3 cut(s) 120, 184, 188
CviKI_1 RGCY 3 cut(s) 120, 184, 188
CviQI GTAC 3 cut(s) 93, 156, 215
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DraI TTTAAA 1 cut(s) 112
Eco105I TACGTA 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 41, 272
FaeI CATG 2 cut(s) 101, 279
FaiI YATR 8 cut(s) 30, 50, 99, 123, 209, 211, 277, 306
FatI CATG 2 cut(s) 97, 275
FokI GGATG 1 cut(s) 344
Hin1II CATG 2 cut(s) 101, 279
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 1 cut(s) 286
Hpy166II GTNNAC 4 cut(s) 57, 64, 158, 249
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 2 cut(s) 44, 290
Hpy8I GTNNAC 4 cut(s) 57, 64, 158, 249
Hpy99I CGWCG 2 cut(s) 271, 343
HpyCH4III ACNGT 2 cut(s) 54, 61
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 5 cut(s) 11, 69, 171, 249, 279
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 101, 279
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 355
LpnPI CCDG 7 cut(s) 57, 151, 157, 170, 265, 303, 307
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 138
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 161, 298
MnlI CCTC 2 cut(s) 223, 227
MseI TTAA 2 cut(s) 111, 355
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 101, 279
NlaIV GGNNCC 2 cut(s) 105, 273
NspV TTCGAA 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 286
Ppu21I YACGTR 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 105, 273
PspPI GGNCC 2 cut(s) 41, 272
RsaI GTAC 3 cut(s) 94, 157, 216
RsaNI GTAC 3 cut(s) 93, 156, 215
SaqAI TTAA 2 cut(s) 111, 355
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 41, 272
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 118, 122, 176, 216, 238, 284
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 2 cut(s) 41, 272
SnaBI TACGTA 1 cut(s) 214
Sse9I AATT 2 cut(s) 161, 298
TaaI ACNGT 2 cut(s) 54, 61
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 177, 204
TasI AATT 2 cut(s) 161, 298
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 111, 355
Tru9I TTAA 2 cut(s) 111, 355
TscAI CASTG 1 cut(s) 71
TspRI CASTG 1 cut(s) 71
VneI GTGCAC 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 41, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.