RchiOBHm_Chr4g0396781

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000577
Physical Location & Seq
Reverse (-)
12854859 .. 12855270
412 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36915

Sequence Viewer

Length: 234 bp
ATGGCTTCGTTTGCACAAAATGTACAACTCCTAAGCTTGCTGCTTGCAGTTTTCCTGACAACTTGTGATGCTAATGCGCGAGTACGCGTTCTGATCACCAACGAAATATCGGATTATCAGGGGAAACCTAACGTGACAATCACCCTTCACTGTAGATCTAGGGACGATGATCTTGGTTCCCATGAGGTCCCCTATCTTTCCAACTACGAATTTACTTTCAAACCAAGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

77

Amino Acids

8.65

Weight (kDa)

5.45

Isoelectric Point (pI)

22.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 76 9.7e-07 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 79, 87
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 2 cut(s) 24, 84
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 209
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 88, 133
AvaII GGWCC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 27
BclI TGATCA 1 cut(s) 93
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 151
BglII AGATCT 1 cut(s) 155
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 178, 189
BmsI GCATC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 32
BseXI GCAGC 1 cut(s) 27
Bsh1236I CGCG 2 cut(s) 79, 87
BslFI GGGAC 2 cut(s) 173, 176
BsmFI GGGAC 2 cut(s) 173, 176
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 93, 155, 169
BspFNI CGCG 2 cut(s) 79, 87
BspLI GGNNCC 2 cut(s) 178, 189
BsrGI TGTACA 1 cut(s) 22
BssMI GATC 3 cut(s) 93, 155, 169
Bst4CI ACNGT 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 38, 45
BstDEI CTNAG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 79, 87
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 96, 158, 172
BstMBI GATC 3 cut(s) 93, 155, 169
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 2 cut(s) 79, 87
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 38, 45
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 23, 83
CviAII CATG 1 cut(s) 182
CviJI RGCY 2 cut(s) 5, 36
CviKI_1 RGCY 2 cut(s) 5, 36
CviQI GTAC 2 cut(s) 23, 83
DdeI CTNAG 1 cut(s) 32
DpnI GATC 3 cut(s) 95, 157, 171
DpnII GATC 3 cut(s) 93, 155, 169
Eco47I GGWCC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 187
FaeI CATG 1 cut(s) 185
FaiI YATR 1 cut(s) 183
FaqI GGGAC 2 cut(s) 173, 176
FatI CATG 1 cut(s) 181
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 159
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 79
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 34
HphI GGTGA 2 cut(s) 88, 133
Hpy188I TCNGA 2 cut(s) 93, 112
Hpy188III TCNNGA 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 14, 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 3 cut(s) 93, 155, 169
LpnPI CCDG 2 cut(s) 68, 104
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 159
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 133
MalI GATC 3 cut(s) 95, 157, 171
MboI GATC 3 cut(s) 93, 155, 169
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 209
MluI ACGCGT 1 cut(s) 85
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 1 cut(s) 178
MvnI CGCG 2 cut(s) 79, 87
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 93, 155, 169
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 178, 189
NmuCI GTSAC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 178, 189
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 2 cut(s) 24, 84
RsaNI GTAC 2 cut(s) 23, 83
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 93, 155, 169
Sau96I GGNCC 1 cut(s) 187
SetI ASST 4 cut(s) 38, 130, 135, 189
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 1 cut(s) 187
Sse9I AATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 135
TasI AATT 1 cut(s) 209
TatI WGTACW 1 cut(s) 22
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 1 cut(s) 133
TspRI CASTG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.