MD17G1052500.v1.1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000577
Physical Location & Seq
Reverse (-)
4130216 .. 4130779
564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1052500.v1.1.491

Sequence Viewer

Length: 375 bp
ATGCGCGATGTAATTCATGTGAAAATGACCAACGATATTGGCCCAGATATACAATTGACCGTCCATTGCAAATCCAAAGACGACGATCTTGGCACTCATGTGATTCCATTCAAAGGTGACTACGAATTGGAGTATGGAAATGGAAGGGCGTACAATCCACCTCCCTACGAATTTTCCTTTGGGACCAGTATTTGGGGTGGTACACAATTCCTCTACAAGTTCGACTGGCTGGCTGTATTTCCCTACTTCGACATATACATGCAATCTAGAGATTCTAATGAGTGTGATGATTGCTTTTATAGAATAGTACTAACGGGTCCATGCAGGTTCAATCCGGAATACAGGGCATATAACATTTGCTTTCTCTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

125

Amino Acids

14.63

Weight (kDa)

4.83

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 6 - 45 5.7e-09 Plant self-incompatibility protein S1
Self-incomp_S1 PF05938 55 - 123 4.8e-09 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AccB7I CCANNNNNTGG 1 cut(s) 192
AccII CGCG 1 cut(s) 6
AccIII TCCGGA 1 cut(s) 334
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 3 cut(s) 152, 202, 309
AfiI CCNNNNNNNGG 2 cut(s) 113, 192
AgsI TTSAA 2 cut(s) 112, 331
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AleI CACNNNNGTG 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 41, 183, 317
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 2 cut(s) 183, 317
BfaI CTAG 2 cut(s) 267, 373
BfuAI ACCTGC 1 cut(s) 315
BmcAI AGTACT 1 cut(s) 309
Bme18I GGWCC 2 cut(s) 183, 317
BmgT120I GGNCC 3 cut(s) 41, 183, 317
BmiI GGNNCC 2 cut(s) 184, 318
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 192
Bse1I ACTGG 2 cut(s) 186, 230
Bse3DI GCAATG 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 113, 192
BseMI GCAATG 1 cut(s) 64
BseNI ACTGG 2 cut(s) 186, 230
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 2 cut(s) 113, 192
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 1 cut(s) 85
BspANI GGCC 1 cut(s) 42
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 184, 318
BspMI ACCTGC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 2 cut(s) 186, 230
BssMI GATC 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 231
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 262
BstUI CGCG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 3 cut(s) 41, 183, 317
Csp6I GTAC 3 cut(s) 151, 201, 308
CviAII CATG 4 cut(s) 17, 98, 259, 321
CviJI RGCY 3 cut(s) 42, 229, 233
CviKI_1 RGCY 3 cut(s) 42, 229, 233
CviQI GTAC 3 cut(s) 151, 201, 308
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 183, 317
FaeI CATG 4 cut(s) 20, 101, 262, 324
FaqI GGGAC 1 cut(s) 196
FatI CATG 4 cut(s) 16, 97, 258, 320
FspBI CTAG 2 cut(s) 267, 373
GlaI GCGC 1 cut(s) 5
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 335
HhaI GCGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 20, 101, 262, 324
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 2 cut(s) 103, 272
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 203
Hpy188III TCNNGA 3 cut(s) 267, 335, 367
Hpy8I GTNNAC 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 69, 262, 324
Hsp92II CATG 4 cut(s) 20, 101, 262, 324
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 334
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 8 cut(s) 57, 199, 211, 215, 310, 328, 348, 352
MaeI CTAG 2 cut(s) 267, 373
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MfeI CAATTG 1 cut(s) 53
MluCI AATT 5 cut(s) 12, 53, 125, 170, 206
MnlI CCTC 2 cut(s) 171, 221
MroI TCCGGA 1 cut(s) 334
MslI CAYNNNNRTG 2 cut(s) 98, 257
MspI CCGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 53
MvnI CGCG 1 cut(s) 6
NdeII GATC 1 cut(s) 85
NlaIII CATG 4 cut(s) 20, 101, 262, 324
NlaIV GGNNCC 2 cut(s) 184, 318
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 262
OliI CACNNNNGTG 1 cut(s) 98
PfeI GAWTC 2 cut(s) 103, 272
PflMI CCANNNNNTGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 184, 318
PspPI GGNCC 3 cut(s) 41, 183, 317
RsaI GTAC 3 cut(s) 152, 202, 309
RsaNI GTAC 3 cut(s) 151, 201, 308
RseI CAYNNNNRTG 2 cut(s) 98, 257
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 3 cut(s) 41, 183, 317
ScaI AGTACT 1 cut(s) 309
SetI ASST 3 cut(s) 118, 163, 329
SinI GGWCC 2 cut(s) 183, 317
SmiMI CAYNNNNRTG 2 cut(s) 98, 257
Sse9I AATT 5 cut(s) 12, 53, 125, 170, 206
SspMI CTAG 2 cut(s) 267, 373
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 222, 249
TasI AATT 5 cut(s) 12, 53, 125, 170, 206
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 2 cut(s) 103, 272
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 5
Van91I CCANNNNNTGG 1 cut(s) 192
VpaK11BI GGWCC 2 cut(s) 183, 317
XapI RAATTY 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 266
XceI RCATGY 1 cut(s) 262
XspI CTAG 2 cut(s) 267, 373
ZrmI AGTACT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.