pycom17g11360

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000577
Physical Location & Seq
Forward (+)
8903875 .. 8904288
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g11360.1

Sequence Viewer

Length: 414 bp
ATGTATAGCATGGGTTGGTTCAACGGAAGTGCAGTACTGCTGCTAGTCACGCTGGTTTTGTTCACAGTTACCATTTGTTATGCAGTCGAGAGAAAACATGTTAAGATCACAAACTCTTTGGAGAAAGGGCAGACCCTCAACCTTCACTGCAAATCCGGGGACGATGATCTTGGTCTCCAAACGCTTCCCCCGAACGCCAGCTTTCAATTCCACTTCAAACCTAGCTTCATCACAGTAACAAAATTCTACTGCAGTTTTGAATGGCCAGGTGCATTTCAATGGTTCGATATATATGATAACTTTAGAGATGGTGACTATTGTGGAACATGTAATTGGGCTGTGTTTGAAGGCCATCCATGCCTGTGGAACTGGGACACCAACAATTACGACAGATGCTATAAATGGAATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

16.08

Weight (kDa)

5.7

Isoelectric Point (pI)

14.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 33 - 135 4.2e-27 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 36
AflIII ACRYGT 2 cut(s) 97, 326
AgsI TTSAA 6 cut(s) 22, 206, 217, 260, 278, 347
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AluBI AGCT 2 cut(s) 201, 225
AluI AGCT 2 cut(s) 201, 225
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 2 cut(s) 263, 349
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 323
BalI TGGCCA 1 cut(s) 265
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 302, 360
BciT130I CCWGG 1 cut(s) 267
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 44, 222
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmcAI AGTACT 1 cut(s) 36
Bme1390I CCNGG 2 cut(s) 157, 267
BmrFI CCNGG 2 cut(s) 157, 267
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 383
BmuI ACTGGG 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 374
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 2 cut(s) 265, 351
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 2 cut(s) 173, 386
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 173, 386
BsnI GGCC 2 cut(s) 265, 351
Bso31I GGTCTC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 105, 166
BspANI GGCC 2 cut(s) 265, 351
BspMAI CTGCAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 179
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 105, 166
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 67, 235
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 108, 169
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 105, 166
BstMWI GCNNNNNNNGC 2 cut(s) 49, 357
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 2 cut(s) 101, 330
BstSCI CCNGG 2 cut(s) 155, 265
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 27
BstXI CCANNNNNNTGG 1 cut(s) 363
BsuRI GGCC 2 cut(s) 265, 351
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 35
CviAII CATG 4 cut(s) 10, 98, 327, 357
CviJI RGCY 5 cut(s) 201, 225, 265, 338, 351
CviKI_1 RGCY 5 cut(s) 201, 225, 265, 338, 351
CviQI GTAC 1 cut(s) 35
DpnI GATC 2 cut(s) 107, 168
DpnII GATC 2 cut(s) 105, 166
EaeI YGGCCR 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 265
FaeI CATG 4 cut(s) 13, 101, 330, 360
FaqI GGGAC 2 cut(s) 173, 386
FatI CATG 4 cut(s) 9, 97, 326, 356
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 2 cut(s) 44, 222
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 265, 351
HapII CCGG 1 cut(s) 156
Hin1II CATG 4 cut(s) 13, 101, 330, 360
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 152, 341
HpyCH4III ACNGT 2 cut(s) 67, 235
HpyCH4V TGCA 5 cut(s) 32, 83, 150, 252, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 357
Hsp92II CATG 4 cut(s) 13, 101, 330, 360
Kzo9I GATC 2 cut(s) 105, 166
LpnPI CCDG 7 cut(s) 38, 169, 211, 252, 279, 355, 374
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 383
MaeI CTAG 2 cut(s) 44, 222
MaeIII GTNAC 4 cut(s) 46, 67, 235, 311
MalI GATC 2 cut(s) 107, 168
MboI GATC 2 cut(s) 105, 166
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 5 cut(s) 206, 242, 331, 382, 406
MluNI TGGCCA 1 cut(s) 265
MnlI CCTC 1 cut(s) 146
Mox20I TGGCCA 1 cut(s) 265
MscI TGGCCA 1 cut(s) 265
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 277, 361
Msp20I TGGCCA 1 cut(s) 265
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 157, 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 49, 357
NciI CCSGG 1 cut(s) 157
NdeII GATC 2 cut(s) 105, 166
NlaIII CATG 4 cut(s) 13, 101, 330, 360
NmuCI GTSAC 2 cut(s) 46, 311
NspI RCATGY 2 cut(s) 101, 330
PciI ACATGT 2 cut(s) 97, 326
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PkrI GCNGC 1 cut(s) 42
PscI ACATGT 2 cut(s) 97, 326
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PstI CTGCAG 1 cut(s) 254
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 2 cut(s) 277, 361
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 105, 166
ScaI AGTACT 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 157, 267
SetI ASST 5 cut(s) 144, 203, 223, 227, 271
SfaNI GCATC 1 cut(s) 383
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 277, 361
Sse9I AATT 5 cut(s) 206, 242, 331, 382, 406
SspMI CTAG 2 cut(s) 44, 222
StyD4I CCNGG 2 cut(s) 155, 265
TaaI ACNGT 2 cut(s) 67, 235
TaqI TCGA 2 cut(s) 87, 285
TasI AATT 5 cut(s) 206, 242, 331, 382, 406
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 2 cut(s) 46, 311
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 46, 311
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 152
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 101, 330
XspI CTAG 2 cut(s) 44, 222
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.