Rh4BG093100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000577
Physical Location & Seq
Reverse (-)
15922934 .. 15926265
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG093100.1

Sequence Viewer

Length: 417 bp
ATGACAATGTCTAGTGATGGACTTGATCTCGGACGCAAGAGAAGACATATCACCATCTCAAATGGTTTGGACGGGAATACGGCTCTTACTGTTCACTGCAAATCCGGGGATGATGATATTGGTGCGAAAACCCTCCCCACTTTTGGAGTCTATGAATTCAGTTTTAAACCCAAAGTCTTACCACAAACTACACTGTACTTCTGTAGTTTTCAGTGGGAAGGTAATTTTCACTACTACGACGTGTATTTTGAGGGAATCGATTGTAGTGAGTGTATGTATTCGGTAAGGGGCCGGGGATCCAGCATATGCAGAGATGAACATGATAAGGATTCCTGCAAGAGGAAAACCAATTGGTCCAGGACCACCACCATAACTCCCTCAACCTCGGCGAACGCACAGAATGGAAAAATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

138

Amino Acids

15.47

Weight (kDa)

7.61

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 16 - 118 1.1e-19 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 291, 304
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 143, 339
AflIII ACRYGT 1 cut(s) 240
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 1 cut(s) 356
AlwI GGATC 2 cut(s) 291, 304
AoxI GGCC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspS9I GGNCC 3 cut(s) 289, 354, 360
AsuC2I CCSGG 2 cut(s) 106, 293
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 2 cut(s) 354, 360
BamHI GGATCC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 49
BccI CCATC 2 cut(s) 11, 62
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 358
BcnI CCSGG 2 cut(s) 106, 293
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 106, 293, 358
Bme18I GGWCC 2 cut(s) 354, 360
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 289, 354, 360
BmiI GGNNCC 2 cut(s) 290, 298
BmrFI CCNGG 3 cut(s) 106, 293, 358
BpiI GAAGAC 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 106, 293
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 105, 292, 384
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 339
BseBI CCWGG 1 cut(s) 358
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 105, 292, 384
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 143, 339
BshFI GGCC 1 cut(s) 291
BshVI ATCGAT 1 cut(s) 258
BsiSI CCGG 2 cut(s) 105, 292
BslI CCNNNNNNNGG 2 cut(s) 143, 339
BsnI GGCC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 25, 296
BspANI GGCC 1 cut(s) 291
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 290, 298
BspPI GGATC 2 cut(s) 291, 304
BssECI CCNNGG 3 cut(s) 105, 292, 384
BssMI GATC 2 cut(s) 25, 296
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 91, 195
BstENI CCTNNNNNAGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 2 cut(s) 28, 299
BstMBI GATC 2 cut(s) 25, 296
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 104, 291, 356
BstSFI CTRYAG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 1 cut(s) 291
BsuTUI ATCGAT 1 cut(s) 258
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 115
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 3 cut(s) 94, 191, 218
Cfr13I GGNCC 3 cut(s) 289, 354, 360
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 320
CviJI RGCY 3 cut(s) 83, 291, 414
CviKI_1 RGCY 3 cut(s) 83, 291, 414
CviQI GTAC 1 cut(s) 196
DpnI GATC 2 cut(s) 27, 298
DpnII GATC 2 cut(s) 25, 296
DraI TTTAAA 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 354, 360
EcoNI CCTNNNNNAGG 1 cut(s) 337
EcoRI GAATTC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 356
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 48, 153, 275, 305, 307, 321, 371
FatI CATG 1 cut(s) 319
FauNDI CATATG 1 cut(s) 305
FokI GGATG 1 cut(s) 122
FspBI CTAG 1 cut(s) 12
HaeIII GGCC 1 cut(s) 291
HapII CCGG 2 cut(s) 105, 292
HgaI GACGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 323
HinfI GANTC 3 cut(s) 147, 255, 329
HpaII CCGG 2 cut(s) 105, 292
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 2 cut(s) 91, 195
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 99, 309, 336
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 2 cut(s) 25, 296
LpnPI CCDG 6 cut(s) 118, 305, 313, 343, 346, 370
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 240
MalI GATC 2 cut(s) 27, 298
MboI GATC 2 cut(s) 25, 296
MboII GAAGA 1 cut(s) 54
MfeI CAATTG 1 cut(s) 349
MflI RGATCY 1 cut(s) 296
MluCI AATT 4 cut(s) 155, 223, 349, 408
MlyI GAGTC 1 cut(s) 156
MnlI CCTC 5 cut(s) 143, 244, 333, 388, 394
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 105, 292
MspR9I CCNGG 3 cut(s) 106, 293, 358
MunI CAATTG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 358
NciI CCSGG 2 cut(s) 106, 293
NdeI CATATG 1 cut(s) 305
NdeII GATC 2 cut(s) 25, 296
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 2 cut(s) 290, 298
NmeAIII GCCGAG 1 cut(s) 365
PfeI GAWTC 2 cut(s) 255, 329
PflFI GACNNNGTC 1 cut(s) 7
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 290, 298
PspPI GGNCC 3 cut(s) 289, 354, 360
PsuI RGATCY 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 25, 296
Sau96I GGNCC 3 cut(s) 289, 354, 360
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 3 cut(s) 106, 293, 358
SetI ASST 3 cut(s) 223, 243, 386
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 354, 360
Sse9I AATT 4 cut(s) 155, 223, 349, 408
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 104, 291, 356
TaaI ACNGT 2 cut(s) 91, 195
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 258
TasI AATT 4 cut(s) 155, 223, 349, 408
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 2 cut(s) 255, 329
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 3 cut(s) 101, 198, 218
TspDTI ATGAA 2 cut(s) 168, 330
TspRI CASTG 3 cut(s) 101, 198, 218
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 354, 360
XagI CCTNNNNNAGG 1 cut(s) 337
XapI RAATTY 1 cut(s) 155
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.