Rh4DG021200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000577
Physical Location & Seq
Forward (+)
3307912 .. 3308325
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG021200.1

Sequence Viewer

Length: 414 bp
ATGGGTTCCTTCATTGGAAGAGCAATGATGCTAATCTTGCTTATGTTGTTCCTCGTAATTGCTTGTGATGCAAGCTTTAAGAAACATGTTAGAATCACAAATCAATTACAAGGCATGACCCTCAATGTTCACTGCAAATCCGATGATAATGATATCGGTCTCCAAAAGCTTGCCCCTAATGCTTTCTTCCAATTCAGTTTTAAATCTAGTTGGATAGGGAACACTGATTTCTACTGCAGTTTCCAGTGGTCTGGTGCATTCAAATGGTTTGATGTTTATGTGGGCGGTAGAGACCTCAAAGATTGCAACAAGTGTTGGTGGTCTGTAAGATCTACTGAATATGGCCCTCATCCATGTAGGATGGACTGGAACAGCGGCAAGTATGACATTTATAAACCGTGGAATCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

137

Amino Acids

15.96

Weight (kDa)

8.93

Isoelectric Point (pI)

25.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 134 9.7e-23 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16960 AT3G16970 AT3G17080 AT4G16195 AT5G12060 AT5G12070
fragaria_vesca FvH4_2g16811 FvH4_4g02030 FvH4_4g02050 FvH4_4g02160 FvH4_4g05620
malus_domestica MD04G1130600.v1.1 MD07G1006200.v1.1 MD07G1270000.v1.1 MD09G1134100.v1.1 MD09G1134200.v1.1 MD10G1085700.v1.1 MD17G1052500.v1.1 MD17G1052600.v1.1 MD17G1052700.v1.1 MD17G1123000.v1.1
prunus_persica Prupe.1G026600_v2.0.a1 Prupe.1G049500_v2.0.a1 Prupe.1G055500_v2.0.a1 Prupe.1G055600_v2.0.a1 Prupe.1G057000_v2.0.a1 Prupe.1G057100_v2.0.a1 Prupe.1G057200_v2.0.a1 Prupe.1G057300_v2.0.a1 Prupe.1G058100_v2.0.a1 Prupe.8G012700_v2.0.a1
pyrus_communis pycom17g05060 pycom17g11360
rosa_chinensis RchiOBHm_Chr3g0496401 RchiOBHm_Chr4g0389011 RchiOBHm_Chr4g0389231 RchiOBHm_Chr4g0389421 RchiOBHm_Chr4g0396771 RchiOBHm_Chr4g0396781 RchiOBHm_Chr4g0396791 RchiOBHm_Chr4g0399631 RchiOBHm_Chr4g0399641 RchiOBHm_Chr5g0071851 RchiOBHm_Chr6g0268511
rosa_laevigata RLG00000009249 RLG00000009256 RLG00000009505 RLG00000009983 RLG00000009984 RLG00000013253
rosa_multiflora Rmu_sc0000487.1_g000011 Rmu_sc0002404.1_g000026
rosa_roxburghii Rroxscaffold_5G00335430 Rroxscaffold_5G00341610
rosa_rugosa Rorug03G0282200 Rorug03G0347600 Rorug04G0017800 Rorug04G0017800 Rorug05G0227600 Rorug06G0042400 Rorug06G0042500
rosa_samantha Rh3AG328900 Rh4AG027600 Rh4BG093100 Rh4CG029700 Rh4CG077600 Rh4CG077800 Rh4CG104100 Rh4CG104200 Rh4DG020800 Rh4DG021100 Rh4DG021200 Rh4DG067000 Rh4DG067100 Rh6AG162000 Rh6BG166300
rosa_wichuraiana Rw4G002000 Rw4G005780 Rw4G005790 Rw4G007880 Rw6G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AciI CCGC 2 cut(s) 285, 375
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 262
AluBI AGCT 2 cut(s) 75, 169
AluI AGCT 2 cut(s) 75, 169
Alw26I GTCTC 2 cut(s) 164, 285
AoxI GGCC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 344
BccI CCATC 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 164, 285
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 329
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 18, 58
BsaBI GATNNNNATC 1 cut(s) 32
BsaI GGTCTC 2 cut(s) 164, 285
BsaJI CCNNGG 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 244, 371
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 2 cut(s) 349, 366
BseJI GATNNNNATC 1 cut(s) 32
BseMI GCAATG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 244, 371
BshFI GGCC 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 164, 285
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 2 cut(s) 164, 285
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 2 cut(s) 285, 375
BspANI GGCC 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 13
BspTNI GGTCTC 2 cut(s) 164, 285
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 2 cut(s) 244, 371
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 73, 171
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 2 cut(s) 349, 366
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 2 cut(s) 164, 285
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 3 cut(s) 37, 68, 179
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 251
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 1 cut(s) 345
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 2 cut(s) 349, 366
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 3 cut(s) 130, 222, 251
Cac8I GCNNGC 2 cut(s) 73, 171
Cfr13I GGNCC 1 cut(s) 344
CviAII CATG 3 cut(s) 86, 115, 354
CviJI RGCY 3 cut(s) 75, 169, 345
CviKI_1 RGCY 3 cut(s) 75, 169, 345
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
DraI TTTAAA 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco31I GGTCTC 2 cut(s) 164, 285
Eco32I GATATC 1 cut(s) 154
EcoRV GATATC 1 cut(s) 154
FaeI CATG 3 cut(s) 89, 118, 357
FaiI YATR 8 cut(s) 44, 87, 116, 279, 342, 355, 384, 393
FatI CATG 3 cut(s) 85, 114, 353
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 2 cut(s) 336, 373
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 376
HaeIII GGCC 1 cut(s) 345
Hin1II CATG 3 cut(s) 89, 118, 357
HindIII AAGCTT 2 cut(s) 73, 167
HinfI GANTC 2 cut(s) 93, 403
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 5 cut(s) 71, 135, 237, 257, 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 68, 179
Hsp92II CATG 3 cut(s) 89, 118, 357
Kzo9I GATC 1 cut(s) 329
LguI GCTCTTC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 237, 257, 352
LweI GCATC 2 cut(s) 18, 58
MaeI CTAG 1 cut(s) 207
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 30, 178
MflI RGATCY 1 cut(s) 329
MluCI AATT 3 cut(s) 57, 104, 191
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 4 cut(s) 62, 131, 305, 357
MseI TTAA 2 cut(s) 78, 201
MslI CAYNNNNRTG 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 37, 68, 179
NdeII GATC 1 cut(s) 329
NlaIII CATG 3 cut(s) 89, 118, 357
NlaIV GGNNCC 1 cut(s) 7
NspI RCATGY 1 cut(s) 89
PciI ACATGT 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 13
PctI GAATGC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 93, 403
PkrI GCNGC 1 cut(s) 377
PscI ACATGT 1 cut(s) 85
PsiI TTATAA 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 1 cut(s) 239
PsuI RGATCY 1 cut(s) 329
RseI CAYNNNNRTG 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 78, 201
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 1 cut(s) 344
SetI ASST 3 cut(s) 77, 171, 297
SfaNI GCATC 2 cut(s) 18, 58
SfcI CTRYAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 262
Sse9I AATT 3 cut(s) 57, 104, 191
SsiI CCGC 2 cut(s) 285, 375
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 399
TaqII GACCGA 1 cut(s) 146
TasI AATT 3 cut(s) 57, 104, 191
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 2 cut(s) 93, 403
Tru1I TTAA 2 cut(s) 78, 201
Tru9I TTAA 2 cut(s) 78, 201
TscAI CASTG 3 cut(s) 137, 229, 251
TspRI CASTG 3 cut(s) 137, 229, 251
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.